Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3591

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3590 and Shewana3_3591 are separated by 107 nucleotidesShewana3_3591 and Shewana3_3592 are separated by 410 nucleotides Shewana3_3590: Shewana3_3590 - single-strand binding protein (RefSeq), at 4,310,551 to 4,311,258 _3590 Shewana3_3591: Shewana3_3591 - major facilitator transporter (RefSeq), at 4,311,366 to 4,312,733 _3591 Shewana3_3592: Shewana3_3592 - excinuclease ABC subunit A (RefSeq), at 4,313,144 to 4,315,996 _3592 Position (kb) 4311 4312 4313Strain fitness (log2 ratio) -1 0 1 2at 4310.390 kb on + strandat 4310.414 kb on + strandat 4310.440 kb on - strandat 4311.386 kb on + strandat 4311.386 kb on - strandat 4311.386 kb on - strandat 4311.386 kb on - strandat 4311.386 kb on - strandat 4311.386 kb on - strandat 4311.474 kb on + strandat 4311.496 kb on + strandat 4311.509 kb on + strand, within Shewana3_3591at 4311.522 kb on - strand, within Shewana3_3591at 4311.533 kb on + strand, within Shewana3_3591at 4311.555 kb on - strand, within Shewana3_3591at 4311.555 kb on - strand, within Shewana3_3591at 4311.663 kb on - strand, within Shewana3_3591at 4311.781 kb on - strand, within Shewana3_3591at 4311.781 kb on - strand, within Shewana3_3591at 4311.928 kb on - strand, within Shewana3_3591at 4312.214 kb on + strand, within Shewana3_3591at 4312.214 kb on + strand, within Shewana3_3591at 4312.245 kb on + strand, within Shewana3_3591at 4312.276 kb on + strand, within Shewana3_3591at 4312.336 kb on - strand, within Shewana3_3591at 4312.368 kb on + strand, within Shewana3_3591at 4312.368 kb on + strand, within Shewana3_3591at 4312.376 kb on - strand, within Shewana3_3591at 4312.391 kb on + strand, within Shewana3_3591at 4312.398 kb on + strand, within Shewana3_3591at 4312.399 kb on - strand, within Shewana3_3591at 4312.553 kb on + strand, within Shewana3_3591at 4312.755 kb on + strandat 4312.763 kb on - strandat 4312.831 kb on - strandat 4312.856 kb on - strandat 4312.968 kb on + strandat 4313.042 kb on + strandat 4313.052 kb on - strandat 4313.296 kb on - strandat 4313.296 kb on - strandat 4313.306 kb on - strandat 4313.375 kb on + strandat 4313.383 kb on - strandat 4313.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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4,310,390 + -0.4
4,310,414 + +0.2
4,310,440 - -0.8
4,311,386 + -1.3
4,311,386 - +0.9
4,311,386 - +1.3
4,311,386 - +0.8
4,311,386 - +0.9
4,311,386 - -0.2
4,311,474 + +1.1
4,311,496 + +2.4
4,311,509 + Shewana3_3591 0.10 +1.6
4,311,522 - Shewana3_3591 0.11 +0.3
4,311,533 + Shewana3_3591 0.12 +0.0
4,311,555 - Shewana3_3591 0.14 +1.3
4,311,555 - Shewana3_3591 0.14 +0.8
4,311,663 - Shewana3_3591 0.22 +1.5
4,311,781 - Shewana3_3591 0.30 +1.5
4,311,781 - Shewana3_3591 0.30 +1.7
4,311,928 - Shewana3_3591 0.41 +1.1
4,312,214 + Shewana3_3591 0.62 +1.2
4,312,214 + Shewana3_3591 0.62 +1.1
4,312,245 + Shewana3_3591 0.64 +1.4
4,312,276 + Shewana3_3591 0.67 +2.2
4,312,336 - Shewana3_3591 0.71 +1.1
4,312,368 + Shewana3_3591 0.73 +1.1
4,312,368 + Shewana3_3591 0.73 +1.5
4,312,376 - Shewana3_3591 0.74 +1.1
4,312,391 + Shewana3_3591 0.75 +1.6
4,312,398 + Shewana3_3591 0.75 +0.6
4,312,399 - Shewana3_3591 0.76 +0.9
4,312,553 + Shewana3_3591 0.87 -0.0
4,312,755 + +1.4
4,312,763 - +0.8
4,312,831 - +0.1
4,312,856 - +0.9
4,312,968 + -0.5
4,313,042 + -0.7
4,313,052 - +1.2
4,313,296 - -0.5
4,313,296 - -1.7
4,313,306 - -0.4
4,313,375 + -0.2
4,313,383 - -0.6
4,313,416 + +0.4

Or see this region's nucleotide sequence