Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3247

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3245 and Shewana3_3246 are separated by 198 nucleotidesShewana3_3246 and Shewana3_3247 are separated by 124 nucleotidesShewana3_3247 and Shewana3_3248 are separated by 2 nucleotidesShewana3_3248 and Shewana3_3249 are separated by 150 nucleotides Shewana3_3245: Shewana3_3245 - hypothetical protein (RefSeq), at 3,889,024 to 3,889,359 _3245 Shewana3_3246: Shewana3_3246 - hypothetical protein (RefSeq), at 3,889,558 to 3,890,109 _3246 Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091 _3247 Shewana3_3248: Shewana3_3248 - UspA domain-containing protein (RefSeq), at 3,891,094 to 3,891,543 _3248 Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125 _3249 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -2 -1 0 1at 3889.251 kb on + strand, within Shewana3_3245at 3889.310 kb on + strand, within Shewana3_3245at 3889.346 kb on + strandat 3889.466 kb on - strandat 3889.828 kb on - strand, within Shewana3_3246at 3890.191 kb on + strandat 3890.229 kb on - strandat 3890.400 kb on + strand, within Shewana3_3247at 3890.431 kb on + strand, within Shewana3_3247at 3890.468 kb on + strand, within Shewana3_3247at 3890.481 kb on + strand, within Shewana3_3247at 3890.518 kb on + strand, within Shewana3_3247at 3890.603 kb on + strand, within Shewana3_3247at 3890.951 kb on - strand, within Shewana3_3247at 3891.051 kb on - strandat 3891.068 kb on + strandat 3891.358 kb on + strand, within Shewana3_3248at 3891.365 kb on + strand, within Shewana3_3248at 3891.677 kb on + strandat 3891.805 kb on + strand, within Shewana3_3249at 3891.869 kb on - strand, within Shewana3_3249at 3891.935 kb on + strand, within Shewana3_3249

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
3,889,251 + Shewana3_3245 0.68 -0.7
3,889,310 + Shewana3_3245 0.85 +0.6
3,889,346 + -1.2
3,889,466 - +0.0
3,889,828 - Shewana3_3246 0.49 -0.9
3,890,191 + +0.6
3,890,229 - +0.1
3,890,400 + Shewana3_3247 0.19 -2.3
3,890,431 + Shewana3_3247 0.23 -1.0
3,890,468 + Shewana3_3247 0.27 -0.7
3,890,481 + Shewana3_3247 0.29 -0.3
3,890,518 + Shewana3_3247 0.33 -0.4
3,890,603 + Shewana3_3247 0.43 -1.6
3,890,951 - Shewana3_3247 0.84 -1.5
3,891,051 - +0.9
3,891,068 + -0.0
3,891,358 + Shewana3_3248 0.59 +0.0
3,891,365 + Shewana3_3248 0.60 -0.3
3,891,677 + +0.6
3,891,805 + Shewana3_3249 0.26 +0.0
3,891,869 - Shewana3_3249 0.41 +0.0
3,891,935 + Shewana3_3249 0.56 +0.6

Or see this region's nucleotide sequence