Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3245 and Shewana3_3246 are separated by 198 nucleotides Shewana3_3246 and Shewana3_3247 are separated by 124 nucleotides Shewana3_3247 and Shewana3_3248 are separated by 2 nucleotides Shewana3_3248 and Shewana3_3249 are separated by 150 nucleotides
Shewana3_3245: Shewana3_3245 - hypothetical protein (RefSeq), at 3,889,024 to 3,889,359
_3245
Shewana3_3246: Shewana3_3246 - hypothetical protein (RefSeq), at 3,889,558 to 3,890,109
_3246
Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091
_3247
Shewana3_3248: Shewana3_3248 - UspA domain-containing protein (RefSeq), at 3,891,094 to 3,891,543
_3248
Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125
_3249
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-2
-1
0
1 at 3889.251 kb on + strand, within Shewana3_3245 at 3889.310 kb on + strand, within Shewana3_3245 at 3889.346 kb on + strand at 3889.466 kb on - strand at 3889.828 kb on - strand, within Shewana3_3246 at 3890.191 kb on + strand at 3890.229 kb on - strand at 3890.400 kb on + strand, within Shewana3_3247 at 3890.431 kb on + strand, within Shewana3_3247 at 3890.468 kb on + strand, within Shewana3_3247 at 3890.481 kb on + strand, within Shewana3_3247 at 3890.518 kb on + strand, within Shewana3_3247 at 3890.603 kb on + strand, within Shewana3_3247 at 3890.951 kb on - strand, within Shewana3_3247 at 3891.051 kb on - strand at 3891.068 kb on + strand at 3891.358 kb on + strand, within Shewana3_3248 at 3891.365 kb on + strand, within Shewana3_3248 at 3891.677 kb on + strand at 3891.805 kb on + strand, within Shewana3_3249 at 3891.869 kb on - strand, within Shewana3_3249 at 3891.935 kb on + strand, within Shewana3_3249
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,889,251 + Shewana3_3245 0.68 -0.7 3,889,310 + Shewana3_3245 0.85 +0.6 3,889,346 + -1.2 3,889,466 - +0.0 3,889,828 - Shewana3_3246 0.49 -0.9 3,890,191 + +0.6 3,890,229 - +0.1 3,890,400 + Shewana3_3247 0.19 -2.3 3,890,431 + Shewana3_3247 0.23 -1.0 3,890,468 + Shewana3_3247 0.27 -0.7 3,890,481 + Shewana3_3247 0.29 -0.3 3,890,518 + Shewana3_3247 0.33 -0.4 3,890,603 + Shewana3_3247 0.43 -1.6 3,890,951 - Shewana3_3247 0.84 -1.5 3,891,051 - +0.9 3,891,068 + -0.0 3,891,358 + Shewana3_3248 0.59 +0.0 3,891,365 + Shewana3_3248 0.60 -0.3 3,891,677 + +0.6 3,891,805 + Shewana3_3249 0.26 +0.0 3,891,869 - Shewana3_3249 0.41 +0.0 3,891,935 + Shewana3_3249 0.56 +0.6
Or see this region's nucleotide sequence