Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3210

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3208 and ksgA are separated by 14 nucleotidesksgA and apaG are separated by 55 nucleotidesapaG and apaH are separated by 21 nucleotidesapaH and Shewana3_3212 are separated by 96 nucleotides Shewana3_3208: Shewana3_3208 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 3,852,649 to 3,853,635 _3208 Shewana3_3209: ksgA - dimethyladenosine transferase (RefSeq), at 3,853,650 to 3,854,456 ksgA Shewana3_3210: apaG - ApaG (RefSeq), at 3,854,512 to 3,854,892 apaG Shewana3_3211: apaH - diadenosine tetraphosphatase (RefSeq), at 3,854,914 to 3,855,738 apaH Shewana3_3212: Shewana3_3212 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,855,835 to 3,857,856 _3212 Position (kb) 3854 3855Strain fitness (log2 ratio) -2 -1 0 1at 3854.347 kb on + strand, within ksgAat 3854.495 kb on - strandat 3854.505 kb on - strandat 3854.571 kb on + strand, within apaGat 3854.825 kb on + strand, within apaGat 3854.994 kb on + strandat 3855.312 kb on - strand, within apaHat 3855.338 kb on + strand, within apaHat 3855.413 kb on + strand, within apaHat 3855.759 kb on + strandat 3855.759 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
3,854,347 + ksgA Shewana3_3209 0.86 +0.6
3,854,495 - -0.7
3,854,505 - +1.6
3,854,571 + apaG Shewana3_3210 0.15 +0.0
3,854,825 + apaG Shewana3_3210 0.82 -1.8
3,854,994 + -0.3
3,855,312 - apaH Shewana3_3211 0.48 -1.0
3,855,338 + apaH Shewana3_3211 0.51 -0.5
3,855,413 + apaH Shewana3_3211 0.60 -0.6
3,855,759 + +1.0
3,855,759 + -0.2

Or see this region's nucleotide sequence