Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3028 and Shewana3_3029 are separated by 167 nucleotides Shewana3_3029 and Shewana3_3030 are separated by 11 nucleotides Shewana3_3030 and Shewana3_3031 are separated by 12 nucleotides Shewana3_3031 and Shewana3_3032 are separated by 26 nucleotides
Shewana3_3028: Shewana3_3028 - GTP-binding protein LepA (RefSeq), at 3,633,207 to 3,634,997
_3028
Shewana3_3029: Shewana3_3029 - positive regulator of sigma(E), RseC/MucC (RefSeq), at 3,635,165 to 3,635,638
_3029
Shewana3_3030: Shewana3_3030 - sigma E regulatory protein, MucB/RseB (RefSeq), at 3,635,650 to 3,636,582
_3030
Shewana3_3031: Shewana3_3031 - anti sigma-E protein, RseA (RefSeq), at 3,636,595 to 3,637,218
_3031
Shewana3_3032: Shewana3_3032 - RNA polymerase sigma factor RpoE (RefSeq), at 3,637,245 to 3,637,823
_3032
Position (kb) 3635
3636
3637 Strain fitness (log2 ratio) -1
0
1
2 at 3635.910 kb on - strand, within Shewana3_3030 at 3636.169 kb on - strand, within Shewana3_3030 at 3636.448 kb on - strand, within Shewana3_3030 at 3636.525 kb on - strand at 3636.942 kb on - strand, within Shewana3_3031
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,635,910 - Shewana3_3030 0.28 +0.8 3,636,169 - Shewana3_3030 0.56 +0.9 3,636,448 - Shewana3_3030 0.86 +2.4 3,636,525 - +0.8 3,636,942 - Shewana3_3031 0.56 -0.3
Or see this region's nucleotide sequence