Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2944

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2943 and Shewana3_2944 are separated by 835 nucleotidesShewana3_2944 and Shewana3_2945 are separated by 68 nucleotides Shewana3_2943: Shewana3_2943 - malate synthase (RefSeq), at 3,533,376 to 3,535,025 _2943 Shewana3_2944: Shewana3_2944 - TonB-dependent receptor (RefSeq), at 3,535,861 to 3,538,332 _2944 Shewana3_2945: Shewana3_2945 - potassium efflux system protein (RefSeq), at 3,538,401 to 3,540,170 _2945 Position (kb) 3535 3536 3537 3538 3539Strain fitness (log2 ratio) -2 -1 0 1 2at 3534.973 kb on + strandat 3535.449 kb on + strandat 3535.924 kb on - strandat 3536.041 kb on + strandat 3536.212 kb on + strand, within Shewana3_2944at 3536.258 kb on + strand, within Shewana3_2944at 3536.258 kb on + strand, within Shewana3_2944at 3536.266 kb on - strand, within Shewana3_2944at 3536.408 kb on - strand, within Shewana3_2944at 3537.015 kb on + strand, within Shewana3_2944at 3537.324 kb on + strand, within Shewana3_2944at 3537.499 kb on - strandat 3537.589 kb on + strand, within Shewana3_2944at 3537.589 kb on + strand, within Shewana3_2944at 3537.597 kb on - strand, within Shewana3_2944at 3537.652 kb on + strand, within Shewana3_2944at 3537.669 kb on - strand, within Shewana3_2944at 3537.827 kb on - strand, within Shewana3_2944at 3537.837 kb on - strand, within Shewana3_2944at 3538.034 kb on + strand, within Shewana3_2944at 3538.081 kb on + strand, within Shewana3_2944at 3538.097 kb on - strandat 3538.154 kb on - strandat 3538.445 kb on - strandat 3538.479 kb on + strandat 3538.642 kb on - strand, within Shewana3_2945at 3538.646 kb on + strand, within Shewana3_2945at 3538.646 kb on + strand, within Shewana3_2945at 3538.654 kb on - strand, within Shewana3_2945at 3538.988 kb on + strandat 3538.988 kb on + strand, within Shewana3_2945at 3538.996 kb on - strand, within Shewana3_2945at 3539.125 kb on - strand, within Shewana3_2945at 3539.186 kb on + strand, within Shewana3_2945

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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3,534,973 + +0.7
3,535,449 + -1.9
3,535,924 - +0.2
3,536,041 + +1.9
3,536,212 + Shewana3_2944 0.14 +1.6
3,536,258 + Shewana3_2944 0.16 +1.4
3,536,258 + Shewana3_2944 0.16 +1.0
3,536,266 - Shewana3_2944 0.16 +0.7
3,536,408 - Shewana3_2944 0.22 +1.7
3,537,015 + Shewana3_2944 0.47 +1.4
3,537,324 + Shewana3_2944 0.59 +1.5
3,537,499 - +1.7
3,537,589 + Shewana3_2944 0.70 +1.4
3,537,589 + Shewana3_2944 0.70 +1.0
3,537,597 - Shewana3_2944 0.70 -2.0
3,537,652 + Shewana3_2944 0.72 +1.2
3,537,669 - Shewana3_2944 0.73 +1.7
3,537,827 - Shewana3_2944 0.80 +1.7
3,537,837 - Shewana3_2944 0.80 -0.3
3,538,034 + Shewana3_2944 0.88 +1.4
3,538,081 + Shewana3_2944 0.90 +1.6
3,538,097 - -0.9
3,538,154 - +0.7
3,538,445 - +0.2
3,538,479 + -0.1
3,538,642 - Shewana3_2945 0.14 +0.2
3,538,646 + Shewana3_2945 0.14 +0.7
3,538,646 + Shewana3_2945 0.14 +0.7
3,538,654 - Shewana3_2945 0.14 +0.4
3,538,988 + +1.7
3,538,988 + Shewana3_2945 0.33 +0.3
3,538,996 - Shewana3_2945 0.34 -1.2
3,539,125 - Shewana3_2945 0.41 -1.2
3,539,186 + Shewana3_2945 0.44 +0.7

Or see this region's nucleotide sequence