Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2943 and Shewana3_2944 are separated by 835 nucleotides Shewana3_2944 and Shewana3_2945 are separated by 68 nucleotides
Shewana3_2943: Shewana3_2943 - malate synthase (RefSeq), at 3,533,376 to 3,535,025
_2943
Shewana3_2944: Shewana3_2944 - TonB-dependent receptor (RefSeq), at 3,535,861 to 3,538,332
_2944
Shewana3_2945: Shewana3_2945 - potassium efflux system protein (RefSeq), at 3,538,401 to 3,540,170
_2945
Position (kb)
3535
3536
3537
3538
3539 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3534.973 kb on + strand at 3535.449 kb on + strand at 3535.924 kb on - strand at 3536.041 kb on + strand at 3536.212 kb on + strand, within Shewana3_2944 at 3536.258 kb on + strand, within Shewana3_2944 at 3536.258 kb on + strand, within Shewana3_2944 at 3536.266 kb on - strand, within Shewana3_2944 at 3536.408 kb on - strand, within Shewana3_2944 at 3537.015 kb on + strand, within Shewana3_2944 at 3537.324 kb on + strand, within Shewana3_2944 at 3537.499 kb on - strand at 3537.589 kb on + strand, within Shewana3_2944 at 3537.589 kb on + strand, within Shewana3_2944 at 3537.597 kb on - strand, within Shewana3_2944 at 3537.652 kb on + strand, within Shewana3_2944 at 3537.669 kb on - strand, within Shewana3_2944 at 3537.827 kb on - strand, within Shewana3_2944 at 3537.837 kb on - strand, within Shewana3_2944 at 3538.034 kb on + strand, within Shewana3_2944 at 3538.081 kb on + strand, within Shewana3_2944 at 3538.097 kb on - strand at 3538.154 kb on - strand at 3538.445 kb on - strand at 3538.479 kb on + strand at 3538.642 kb on - strand, within Shewana3_2945 at 3538.646 kb on + strand, within Shewana3_2945 at 3538.646 kb on + strand, within Shewana3_2945 at 3538.654 kb on - strand, within Shewana3_2945 at 3538.988 kb on + strand at 3538.988 kb on + strand, within Shewana3_2945 at 3538.996 kb on - strand, within Shewana3_2945 at 3539.125 kb on - strand, within Shewana3_2945 at 3539.186 kb on + strand, within Shewana3_2945
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,534,973 + +0.7 3,535,449 + -1.9 3,535,924 - +0.2 3,536,041 + +1.9 3,536,212 + Shewana3_2944 0.14 +1.6 3,536,258 + Shewana3_2944 0.16 +1.4 3,536,258 + Shewana3_2944 0.16 +1.0 3,536,266 - Shewana3_2944 0.16 +0.7 3,536,408 - Shewana3_2944 0.22 +1.7 3,537,015 + Shewana3_2944 0.47 +1.4 3,537,324 + Shewana3_2944 0.59 +1.5 3,537,499 - +1.7 3,537,589 + Shewana3_2944 0.70 +1.4 3,537,589 + Shewana3_2944 0.70 +1.0 3,537,597 - Shewana3_2944 0.70 -2.0 3,537,652 + Shewana3_2944 0.72 +1.2 3,537,669 - Shewana3_2944 0.73 +1.7 3,537,827 - Shewana3_2944 0.80 +1.7 3,537,837 - Shewana3_2944 0.80 -0.3 3,538,034 + Shewana3_2944 0.88 +1.4 3,538,081 + Shewana3_2944 0.90 +1.6 3,538,097 - -0.9 3,538,154 - +0.7 3,538,445 - +0.2 3,538,479 + -0.1 3,538,642 - Shewana3_2945 0.14 +0.2 3,538,646 + Shewana3_2945 0.14 +0.7 3,538,646 + Shewana3_2945 0.14 +0.7 3,538,654 - Shewana3_2945 0.14 +0.4 3,538,988 + +1.7 3,538,988 + Shewana3_2945 0.33 +0.3 3,538,996 - Shewana3_2945 0.34 -1.2 3,539,125 - Shewana3_2945 0.41 -1.2 3,539,186 + Shewana3_2945 0.44 +0.7
Or see this region's nucleotide sequence