Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2940

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2939 and Shewana3_2940 are separated by 317 nucleotidesShewana3_2940 and Shewana3_2941 are separated by 37 nucleotidesShewana3_2941 and Shewana3_2942 are separated by 374 nucleotides Shewana3_2939: Shewana3_2939 - hypothetical protein (RefSeq), at 3,530,192 to 3,530,566 _2939 Shewana3_2940: Shewana3_2940 - hypothetical protein (RefSeq), at 3,530,884 to 3,531,129 _2940 Shewana3_2941: Shewana3_2941 - thioesterase superfamily protein (RefSeq), at 3,531,167 to 3,531,535 _2941 Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232 _2942 Position (kb) 3530 3531 3532Strain fitness (log2 ratio) -2 -1 0 1at 3529.984 kb on + strandat 3530.180 kb on + strandat 3530.210 kb on + strandat 3530.223 kb on - strandat 3530.232 kb on - strand, within Shewana3_2939at 3530.268 kb on + strand, within Shewana3_2939at 3530.314 kb on - strand, within Shewana3_2939at 3530.314 kb on - strand, within Shewana3_2939at 3530.377 kb on + strand, within Shewana3_2939at 3530.411 kb on + strand, within Shewana3_2939at 3530.447 kb on + strand, within Shewana3_2939at 3530.827 kb on + strandat 3530.829 kb on + strandat 3530.941 kb on + strand, within Shewana3_2940at 3531.067 kb on + strand, within Shewana3_2940at 3531.196 kb on - strandat 3531.209 kb on - strand, within Shewana3_2941at 3531.424 kb on + strand, within Shewana3_2941at 3531.675 kb on + strandat 3531.731 kb on + strandat 3531.807 kb on - strandat 3531.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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3,529,984 + -0.4
3,530,180 + +0.0
3,530,210 + +0.7
3,530,223 - +0.1
3,530,232 - Shewana3_2939 0.11 +1.4
3,530,268 + Shewana3_2939 0.20 +0.1
3,530,314 - Shewana3_2939 0.33 -2.1
3,530,314 - Shewana3_2939 0.33 +0.9
3,530,377 + Shewana3_2939 0.49 +0.6
3,530,411 + Shewana3_2939 0.58 +1.2
3,530,447 + Shewana3_2939 0.68 +0.9
3,530,827 + -0.1
3,530,829 + -0.0
3,530,941 + Shewana3_2940 0.23 +1.0
3,531,067 + Shewana3_2940 0.74 +1.6
3,531,196 - -1.1
3,531,209 - Shewana3_2941 0.11 -0.4
3,531,424 + Shewana3_2941 0.70 -1.4
3,531,675 + -0.7
3,531,731 + -0.6
3,531,807 - -0.6
3,531,963 - -2.5

Or see this region's nucleotide sequence