Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2939 and Shewana3_2940 are separated by 317 nucleotides Shewana3_2940 and Shewana3_2941 are separated by 37 nucleotides Shewana3_2941 and Shewana3_2942 are separated by 374 nucleotides
Shewana3_2939: Shewana3_2939 - hypothetical protein (RefSeq), at 3,530,192 to 3,530,566
_2939
Shewana3_2940: Shewana3_2940 - hypothetical protein (RefSeq), at 3,530,884 to 3,531,129
_2940
Shewana3_2941: Shewana3_2941 - thioesterase superfamily protein (RefSeq), at 3,531,167 to 3,531,535
_2941
Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232
_2942
Position (kb)
3530
3531
3532 Strain fitness (log2 ratio)
-2
-1
0
1 at 3529.984 kb on + strand at 3530.180 kb on + strand at 3530.210 kb on + strand at 3530.223 kb on - strand at 3530.232 kb on - strand, within Shewana3_2939 at 3530.268 kb on + strand, within Shewana3_2939 at 3530.314 kb on - strand, within Shewana3_2939 at 3530.314 kb on - strand, within Shewana3_2939 at 3530.377 kb on + strand, within Shewana3_2939 at 3530.411 kb on + strand, within Shewana3_2939 at 3530.447 kb on + strand, within Shewana3_2939 at 3530.827 kb on + strand at 3530.829 kb on + strand at 3530.941 kb on + strand, within Shewana3_2940 at 3531.067 kb on + strand, within Shewana3_2940 at 3531.196 kb on - strand at 3531.209 kb on - strand, within Shewana3_2941 at 3531.424 kb on + strand, within Shewana3_2941 at 3531.675 kb on + strand at 3531.731 kb on + strand at 3531.807 kb on - strand at 3531.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,529,984 + -0.4 3,530,180 + +0.0 3,530,210 + +0.7 3,530,223 - +0.1 3,530,232 - Shewana3_2939 0.11 +1.4 3,530,268 + Shewana3_2939 0.20 +0.1 3,530,314 - Shewana3_2939 0.33 -2.1 3,530,314 - Shewana3_2939 0.33 +0.9 3,530,377 + Shewana3_2939 0.49 +0.6 3,530,411 + Shewana3_2939 0.58 +1.2 3,530,447 + Shewana3_2939 0.68 +0.9 3,530,827 + -0.1 3,530,829 + -0.0 3,530,941 + Shewana3_2940 0.23 +1.0 3,531,067 + Shewana3_2940 0.74 +1.6 3,531,196 - -1.1 3,531,209 - Shewana3_2941 0.11 -0.4 3,531,424 + Shewana3_2941 0.70 -1.4 3,531,675 + -0.7 3,531,731 + -0.6 3,531,807 - -0.6 3,531,963 - -2.5
Or see this region's nucleotide sequence