Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2913 and Shewana3_2914 are separated by 1 nucleotides Shewana3_2914 and Shewana3_2915 are separated by 197 nucleotides Shewana3_2915 and Shewana3_2916 overlap by 1 nucleotides
Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565
_2913
Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977
_2914
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322
_2916
Position (kb)
3490
3491
3492 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3489.350 kb on + strand, within Shewana3_2913 at 3489.371 kb on + strand, within Shewana3_2913 at 3489.732 kb on - strand, within Shewana3_2914 at 3489.734 kb on + strand, within Shewana3_2914 at 3490.003 kb on + strand at 3490.011 kb on - strand at 3490.011 kb on - strand at 3490.045 kb on - strand at 3490.728 kb on + strand, within Shewana3_2915 at 3490.881 kb on + strand, within Shewana3_2915 at 3490.904 kb on + strand, within Shewana3_2915 at 3491.067 kb on + strand, within Shewana3_2915 at 3491.414 kb on - strand at 3491.470 kb on + strand, within Shewana3_2915 at 3491.480 kb on + strand, within Shewana3_2915 at 3491.611 kb on + strand at 3491.886 kb on + strand at 3491.894 kb on - strand at 3491.927 kb on - strand, within Shewana3_2916 at 3491.927 kb on - strand, within Shewana3_2916 at 3492.117 kb on - strand, within Shewana3_2916 at 3492.126 kb on - strand, within Shewana3_2916 at 3492.288 kb on + strand, within Shewana3_2916 at 3492.426 kb on + strand, within Shewana3_2916 at 3492.473 kb on + strand, within Shewana3_2916
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,489,350 + Shewana3_2913 0.76 -0.5 3,489,371 + Shewana3_2913 0.78 -1.3 3,489,732 - Shewana3_2914 0.40 -0.4 3,489,734 + Shewana3_2914 0.41 -2.3 3,490,003 + -0.4 3,490,011 - +2.0 3,490,011 - -0.4 3,490,045 - -2.1 3,490,728 + Shewana3_2915 0.37 +0.9 3,490,881 + Shewana3_2915 0.48 +0.4 3,490,904 + Shewana3_2915 0.49 +1.8 3,491,067 + Shewana3_2915 0.60 -0.3 3,491,414 - +0.7 3,491,470 + Shewana3_2915 0.88 -0.1 3,491,480 + Shewana3_2915 0.88 +0.1 3,491,611 + -0.6 3,491,886 + -1.4 3,491,894 - +0.2 3,491,927 - Shewana3_2916 0.10 +0.7 3,491,927 - Shewana3_2916 0.10 +0.2 3,492,117 - Shewana3_2916 0.17 +1.7 3,492,126 - Shewana3_2916 0.18 +1.7 3,492,288 + Shewana3_2916 0.24 -0.6 3,492,426 + Shewana3_2916 0.29 -1.0 3,492,473 + Shewana3_2916 0.31 -0.5
Or see this region's nucleotide sequence