Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2822 and Shewana3_2823 are separated by 74 nucleotides Shewana3_2823 and Shewana3_2824 are separated by 448 nucleotides Shewana3_2824 and Shewana3_2825 overlap by 14 nucleotides Shewana3_2825 and Shewana3_2826 are separated by 131 nucleotides
Shewana3_2822: Shewana3_2822 - PTS system, glucose-like IIB subunint (RefSeq), at 3,370,959 to 3,372,317
_2822
Shewana3_2823: Shewana3_2823 - flavodoxin (RefSeq), at 3,372,392 to 3,372,856
_2823
Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159
_2824
Shewana3_2825: Shewana3_2825 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,374,146 to 3,374,481
_2825
Shewana3_2826: Shewana3_2826 - hypothetical protein (RefSeq), at 3,374,613 to 3,375,626
_2826
Position (kb)
3373
3374
3375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.818 kb on + strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3372.826 kb on - strand at 3373.117 kb on - strand at 3373.222 kb on + strand at 3373.335 kb on - strand at 3373.744 kb on + strand, within Shewana3_2824 at 3373.773 kb on + strand, within Shewana3_2824 at 3373.781 kb on + strand, within Shewana3_2824 at 3373.781 kb on - strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3374.046 kb on - strand, within Shewana3_2824 at 3374.080 kb on - strand at 3374.080 kb on - strand at 3374.199 kb on - strand, within Shewana3_2825 at 3374.224 kb on + strand, within Shewana3_2825 at 3374.243 kb on - strand, within Shewana3_2825 at 3374.289 kb on - strand, within Shewana3_2825 at 3374.290 kb on - strand, within Shewana3_2825 at 3374.338 kb on - strand, within Shewana3_2825 at 3374.396 kb on + strand, within Shewana3_2825 at 3374.486 kb on - strand at 3374.755 kb on - strand, within Shewana3_2826 at 3374.765 kb on - strand, within Shewana3_2826 at 3374.842 kb on + strand, within Shewana3_2826 at 3374.891 kb on + strand, within Shewana3_2826 at 3375.007 kb on - strand, within Shewana3_2826 at 3375.098 kb on + strand, within Shewana3_2826 at 3375.117 kb on + strand, within Shewana3_2826
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,372,818 + +1.8 3,372,818 + +0.2 3,372,818 + +0.2 3,372,818 + -1.2 3,372,818 + +0.8 3,372,818 + +1.8 3,372,818 + -0.5 3,372,818 + +0.2 3,372,818 + +0.8 3,372,818 + +0.8 3,372,818 + -1.4 3,372,818 + -0.5 3,372,826 - -1.4 3,372,826 - +1.3 3,372,826 - +0.2 3,372,826 - -0.3 3,372,826 - +0.5 3,372,826 - +0.7 3,372,826 - +0.4 3,372,826 - +0.2 3,372,826 - +0.6 3,372,826 - -0.3 3,372,826 - -0.7 3,373,117 - -2.5 3,373,222 + -1.8 3,373,335 - -0.0 3,373,744 + Shewana3_2824 0.51 -1.2 3,373,773 + Shewana3_2824 0.55 +0.2 3,373,781 + Shewana3_2824 0.56 -1.9 3,373,781 - Shewana3_2824 0.56 -1.5 3,373,991 + Shewana3_2824 0.80 -0.2 3,373,991 + Shewana3_2824 0.80 -1.7 3,374,046 - Shewana3_2824 0.87 -0.6 3,374,080 - -0.3 3,374,080 - -0.0 3,374,199 - Shewana3_2825 0.16 +0.4 3,374,224 + Shewana3_2825 0.23 +0.5 3,374,243 - Shewana3_2825 0.29 +0.0 3,374,289 - Shewana3_2825 0.43 +1.4 3,374,290 - Shewana3_2825 0.43 +0.5 3,374,338 - Shewana3_2825 0.57 +0.8 3,374,396 + Shewana3_2825 0.74 -1.0 3,374,486 - +1.1 3,374,755 - Shewana3_2826 0.14 +0.1 3,374,765 - Shewana3_2826 0.15 +0.8 3,374,842 + Shewana3_2826 0.23 -1.5 3,374,891 + Shewana3_2826 0.27 -0.2 3,375,007 - Shewana3_2826 0.39 +0.3 3,375,098 + Shewana3_2826 0.48 +0.9 3,375,117 + Shewana3_2826 0.50 -0.1
Or see this region's nucleotide sequence