Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2776

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2775 and Shewana3_2776 are separated by 458 nucleotidesShewana3_2776 and Shewana3_2777 are separated by 98 nucleotidesShewana3_2777 and Shewana3_2778 are separated by 84 nucleotides Shewana3_2775: Shewana3_2775 - outer membrane protein W (RefSeq), at 3,314,270 to 3,314,926 _2775 Shewana3_2776: Shewana3_2776 - hypothetical protein (RefSeq), at 3,315,385 to 3,315,972 _2776 Shewana3_2777: Shewana3_2777 - maleylacetoacetate isomerase (RefSeq), at 3,316,071 to 3,316,721 _2777 Shewana3_2778: Shewana3_2778 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,316,806 to 3,317,792 _2778 Position (kb) 3315 3316Strain fitness (log2 ratio) -3 -2 -1 0 1at 3314.447 kb on + strand, within Shewana3_2775at 3314.447 kb on + strand, within Shewana3_2775at 3314.465 kb on - strand, within Shewana3_2775at 3314.600 kb on + strand, within Shewana3_2775at 3314.600 kb on + strand, within Shewana3_2775at 3314.659 kb on - strand, within Shewana3_2775at 3315.074 kb on + strandat 3315.144 kb on + strandat 3315.345 kb on + strandat 3315.374 kb on + strandat 3315.796 kb on + strand, within Shewana3_2776at 3315.798 kb on + strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.806 kb on - strand, within Shewana3_2776at 3315.913 kb on - strand, within Shewana3_2776at 3315.924 kb on - strandat 3315.929 kb on - strandat 3315.946 kb on - strandat 3316.068 kb on + strandat 3316.135 kb on + strandat 3316.135 kb on + strandat 3316.200 kb on - strand, within Shewana3_2777at 3316.324 kb on + strand, within Shewana3_2777at 3316.357 kb on + strand, within Shewana3_2777at 3316.517 kb on - strand, within Shewana3_2777at 3316.732 kb on + strandat 3316.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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3,314,447 + Shewana3_2775 0.27 -0.2
3,314,447 + Shewana3_2775 0.27 -0.2
3,314,465 - Shewana3_2775 0.30 +1.0
3,314,600 + Shewana3_2775 0.50 +0.2
3,314,600 + Shewana3_2775 0.50 -0.2
3,314,659 - Shewana3_2775 0.59 +1.3
3,315,074 + -1.3
3,315,144 + +0.8
3,315,345 + -2.0
3,315,374 + -0.1
3,315,796 + Shewana3_2776 0.70 -0.4
3,315,798 + Shewana3_2776 0.70 -0.2
3,315,806 - Shewana3_2776 0.72 -1.2
3,315,806 - Shewana3_2776 0.72 -1.5
3,315,913 - Shewana3_2776 0.90 +0.3
3,315,924 - -0.4
3,315,929 - -1.4
3,315,946 - -1.7
3,316,068 + -1.1
3,316,135 + -0.9
3,316,135 + -3.0
3,316,200 - Shewana3_2777 0.20 +0.0
3,316,324 + Shewana3_2777 0.39 -0.2
3,316,357 + Shewana3_2777 0.44 +0.6
3,316,517 - Shewana3_2777 0.69 +0.1
3,316,732 + +0.2
3,316,803 + +0.2

Or see this region's nucleotide sequence