Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2752

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2750 and Shewana3_2751 overlap by 1 nucleotidesShewana3_2751 and Shewana3_2752 are separated by 175 nucleotidesShewana3_2752 and Shewana3_2753 are separated by 478 nucleotides Shewana3_2750: Shewana3_2750 - secretion protein HlyD family protein (RefSeq), at 3,281,818 to 3,282,831 _2750 Shewana3_2751: Shewana3_2751 - TetR family transcriptional regulator (RefSeq), at 3,282,831 to 3,283,529 _2751 Shewana3_2752: Shewana3_2752 - hypothetical protein (RefSeq), at 3,283,705 to 3,284,073 _2752 Shewana3_2753: Shewana3_2753 - hypothetical protein (RefSeq), at 3,284,552 to 3,285,409 _2753 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -2 -1 0 1at 3282.837 kb on + strandat 3282.846 kb on - strandat 3282.895 kb on - strandat 3283.200 kb on - strand, within Shewana3_2751at 3283.265 kb on + strand, within Shewana3_2751at 3283.308 kb on - strand, within Shewana3_2751at 3283.441 kb on - strand, within Shewana3_2751at 3283.653 kb on - strandat 3283.812 kb on - strand, within Shewana3_2752at 3283.912 kb on + strand, within Shewana3_2752at 3283.914 kb on - strand, within Shewana3_2752at 3284.358 kb on + strandat 3284.384 kb on - strandat 3284.489 kb on + strandat 3284.489 kb on + strandat 3284.497 kb on - strandat 3284.519 kb on - strandat 3284.557 kb on + strandat 3284.576 kb on - strandat 3284.648 kb on - strand, within Shewana3_2753at 3284.800 kb on + strand, within Shewana3_2753at 3284.808 kb on + strand, within Shewana3_2753at 3284.808 kb on - strand, within Shewana3_2753at 3284.811 kb on - strand, within Shewana3_2753at 3284.923 kb on + strand, within Shewana3_2753at 3284.957 kb on - strand, within Shewana3_2753

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
3,282,837 + +0.2
3,282,846 - -2.0
3,282,895 - +0.1
3,283,200 - Shewana3_2751 0.53 -0.4
3,283,265 + Shewana3_2751 0.62 +0.0
3,283,308 - Shewana3_2751 0.68 -0.3
3,283,441 - Shewana3_2751 0.87 -0.1
3,283,653 - +0.5
3,283,812 - Shewana3_2752 0.29 -0.8
3,283,912 + Shewana3_2752 0.56 +0.4
3,283,914 - Shewana3_2752 0.57 -0.7
3,284,358 + +1.3
3,284,384 - -0.0
3,284,489 + +1.4
3,284,489 + +1.3
3,284,497 - -1.1
3,284,519 - -0.2
3,284,557 + +0.2
3,284,576 - -0.2
3,284,648 - Shewana3_2753 0.11 -0.3
3,284,800 + Shewana3_2753 0.29 -1.1
3,284,808 + Shewana3_2753 0.30 +0.6
3,284,808 - Shewana3_2753 0.30 -0.9
3,284,811 - Shewana3_2753 0.30 -0.1
3,284,923 + Shewana3_2753 0.43 -1.1
3,284,957 - Shewana3_2753 0.47 -1.3

Or see this region's nucleotide sequence