Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2714

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2713 and Shewana3_2714 overlap by 1 nucleotidesShewana3_2714 and Shewana3_2715 are separated by 170 nucleotides Shewana3_2713: Shewana3_2713 - peptide synthase (RefSeq), at 3,242,653 to 3,244,479 _2713 Shewana3_2714: Shewana3_2714 - alpha/beta hydrolase fold (RefSeq), at 3,244,479 to 3,245,441 _2714 Shewana3_2715: Shewana3_2715 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,245,612 to 3,246,661 _2715 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -2 -1 0 1 2at 3243.534 kb on - strand, within Shewana3_2713at 3243.839 kb on + strand, within Shewana3_2713at 3244.431 kb on - strandat 3244.510 kb on + strandat 3244.576 kb on + strand, within Shewana3_2714at 3244.584 kb on - strand, within Shewana3_2714at 3244.978 kb on - strand, within Shewana3_2714at 3244.983 kb on - strand, within Shewana3_2714at 3245.028 kb on - strand, within Shewana3_2714at 3245.091 kb on - strand, within Shewana3_2714at 3245.132 kb on - strand, within Shewana3_2714at 3245.174 kb on - strand, within Shewana3_2714at 3245.206 kb on - strand, within Shewana3_2714at 3245.367 kb on - strandat 3245.569 kb on - strandat 3245.574 kb on - strandat 3245.592 kb on - strandat 3245.647 kb on - strandat 3245.732 kb on - strand, within Shewana3_2715at 3245.807 kb on - strand, within Shewana3_2715at 3245.895 kb on + strand, within Shewana3_2715at 3246.399 kb on - strand, within Shewana3_2715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
3,243,534 - Shewana3_2713 0.48 +0.2
3,243,839 + Shewana3_2713 0.65 -0.5
3,244,431 - +0.9
3,244,510 + -1.9
3,244,576 + Shewana3_2714 0.10 +1.8
3,244,584 - Shewana3_2714 0.11 -0.1
3,244,978 - Shewana3_2714 0.52 -1.9
3,244,983 - Shewana3_2714 0.52 +0.3
3,245,028 - Shewana3_2714 0.57 -0.5
3,245,091 - Shewana3_2714 0.64 -1.0
3,245,132 - Shewana3_2714 0.68 +1.2
3,245,174 - Shewana3_2714 0.72 -0.3
3,245,206 - Shewana3_2714 0.75 -1.5
3,245,367 - +0.6
3,245,569 - -0.2
3,245,574 - +0.8
3,245,592 - +0.2
3,245,647 - +0.7
3,245,732 - Shewana3_2715 0.11 +0.2
3,245,807 - Shewana3_2715 0.19 -0.1
3,245,895 + Shewana3_2715 0.27 -0.8
3,246,399 - Shewana3_2715 0.75 +0.3

Or see this region's nucleotide sequence