Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2710 and Shewana3_2711 are separated by 472 nucleotides Shewana3_2711 and Shewana3_2712 are separated by 26 nucleotides Shewana3_2712 and Shewana3_2713 are separated by 85 nucleotides
Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599
_2710
Shewana3_2711: Shewana3_2711 - hypothetical protein (RefSeq), at 3,241,072 to 3,241,356
_2711
Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567
_2712
Shewana3_2713: Shewana3_2713 - peptide synthase (RefSeq), at 3,242,653 to 3,244,479
_2713
Position (kb)
3241
3242
3243 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3240.505 kb on + strand at 3240.674 kb on + strand at 3240.733 kb on + strand at 3240.793 kb on + strand at 3240.881 kb on - strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.942 kb on + strand at 3240.950 kb on - strand at 3241.197 kb on + strand, within Shewana3_2711 at 3241.289 kb on + strand, within Shewana3_2711 at 3241.393 kb on + strand at 3241.424 kb on + strand at 3242.233 kb on - strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.371 kb on + strand, within Shewana3_2712 at 3242.961 kb on + strand, within Shewana3_2713 at 3243.089 kb on - strand, within Shewana3_2713 at 3243.167 kb on - strand, within Shewana3_2713 at 3243.236 kb on + strand, within Shewana3_2713 at 3243.263 kb on - strand, within Shewana3_2713 at 3243.534 kb on - strand, within Shewana3_2713
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,240,505 + +1.8 3,240,674 + -1.1 3,240,733 + -1.5 3,240,793 + -1.2 3,240,881 - -1.6 3,240,942 + -0.3 3,240,942 + -0.8 3,240,942 + -1.8 3,240,950 - -0.3 3,241,197 + Shewana3_2711 0.44 +0.8 3,241,289 + Shewana3_2711 0.76 +1.8 3,241,393 + -0.7 3,241,424 + -0.6 3,242,233 - Shewana3_2712 0.72 -0.5 3,242,281 + Shewana3_2712 0.76 -1.0 3,242,281 + Shewana3_2712 0.76 -0.2 3,242,371 + Shewana3_2712 0.83 +1.8 3,242,961 + Shewana3_2713 0.17 -1.2 3,243,089 - Shewana3_2713 0.24 -1.9 3,243,167 - Shewana3_2713 0.28 -2.8 3,243,236 + Shewana3_2713 0.32 -1.4 3,243,263 - Shewana3_2713 0.33 +0.1 3,243,534 - Shewana3_2713 0.48 +0.2
Or see this region's nucleotide sequence