Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2712

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2710 and Shewana3_2711 are separated by 472 nucleotidesShewana3_2711 and Shewana3_2712 are separated by 26 nucleotidesShewana3_2712 and Shewana3_2713 are separated by 85 nucleotides Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599 _2710 Shewana3_2711: Shewana3_2711 - hypothetical protein (RefSeq), at 3,241,072 to 3,241,356 _2711 Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567 _2712 Shewana3_2713: Shewana3_2713 - peptide synthase (RefSeq), at 3,242,653 to 3,244,479 _2713 Position (kb) 3241 3242 3243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3240.505 kb on + strandat 3240.674 kb on + strandat 3240.733 kb on + strandat 3240.793 kb on + strandat 3240.881 kb on - strandat 3240.942 kb on + strandat 3240.942 kb on + strandat 3240.942 kb on + strandat 3240.950 kb on - strandat 3241.197 kb on + strand, within Shewana3_2711at 3241.289 kb on + strand, within Shewana3_2711at 3241.393 kb on + strandat 3241.424 kb on + strandat 3242.233 kb on - strand, within Shewana3_2712at 3242.281 kb on + strand, within Shewana3_2712at 3242.281 kb on + strand, within Shewana3_2712at 3242.371 kb on + strand, within Shewana3_2712at 3242.961 kb on + strand, within Shewana3_2713at 3243.089 kb on - strand, within Shewana3_2713at 3243.167 kb on - strand, within Shewana3_2713at 3243.236 kb on + strand, within Shewana3_2713at 3243.263 kb on - strand, within Shewana3_2713at 3243.534 kb on - strand, within Shewana3_2713

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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3,240,505 + +1.8
3,240,674 + -1.1
3,240,733 + -1.5
3,240,793 + -1.2
3,240,881 - -1.6
3,240,942 + -0.3
3,240,942 + -0.8
3,240,942 + -1.8
3,240,950 - -0.3
3,241,197 + Shewana3_2711 0.44 +0.8
3,241,289 + Shewana3_2711 0.76 +1.8
3,241,393 + -0.7
3,241,424 + -0.6
3,242,233 - Shewana3_2712 0.72 -0.5
3,242,281 + Shewana3_2712 0.76 -1.0
3,242,281 + Shewana3_2712 0.76 -0.2
3,242,371 + Shewana3_2712 0.83 +1.8
3,242,961 + Shewana3_2713 0.17 -1.2
3,243,089 - Shewana3_2713 0.24 -1.9
3,243,167 - Shewana3_2713 0.28 -2.8
3,243,236 + Shewana3_2713 0.32 -1.4
3,243,263 - Shewana3_2713 0.33 +0.1
3,243,534 - Shewana3_2713 0.48 +0.2

Or see this region's nucleotide sequence