Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2645 and Shewana3_2646 are separated by 94 nucleotides Shewana3_2646 and pspB overlap by 14 nucleotides pspB and Shewana3_2648 are separated by 23 nucleotides Shewana3_2648 and Shewana3_2649 are separated by 177 nucleotides
Shewana3_2645: Shewana3_2645 - protein of unknown function DUF463, YcjX family protein (RefSeq), at 3,159,047 to 3,160,507
_2645
Shewana3_2646: Shewana3_2646 - phage shock protein C, PspC (RefSeq), at 3,160,602 to 3,160,988
_2646
Shewana3_2647: pspB - phage shock protein B (RefSeq), at 3,160,975 to 3,161,208
pspB
Shewana3_2648: Shewana3_2648 - phage shock protein A, PspA (RefSeq), at 3,161,232 to 3,161,915
_2648
Shewana3_2649: Shewana3_2649 - Fis family transcriptional regulator (RefSeq), at 3,162,093 to 3,163,181
_2649
Position (kb)
3161
3162 Strain fitness (log2 ratio)
-1
0
1
2 at 3160.411 kb on + strand at 3160.411 kb on - strand at 3160.451 kb on - strand at 3160.913 kb on - strand, within Shewana3_2646 at 3161.036 kb on - strand, within pspB at 3161.044 kb on - strand, within pspB at 3161.103 kb on - strand, within pspB at 3161.108 kb on - strand, within pspB at 3161.148 kb on - strand, within pspB at 3161.247 kb on + strand at 3161.524 kb on - strand, within Shewana3_2648 at 3161.729 kb on + strand, within Shewana3_2648 at 3161.813 kb on + strand, within Shewana3_2648 at 3161.852 kb on - strand at 3161.950 kb on + strand at 3162.158 kb on - strand at 3162.524 kb on + strand, within Shewana3_2649 at 3162.525 kb on + strand, within Shewana3_2649 at 3162.703 kb on + strand, within Shewana3_2649 at 3162.753 kb on + strand, within Shewana3_2649 at 3162.805 kb on + strand, within Shewana3_2649 at 3162.914 kb on - strand, within Shewana3_2649
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 3,160,411 + -0.5 3,160,411 - -0.8 3,160,451 - -0.6 3,160,913 - Shewana3_2646 0.80 +0.2 3,161,036 - pspB Shewana3_2647 0.26 +0.0 3,161,044 - pspB Shewana3_2647 0.29 +0.7 3,161,103 - pspB Shewana3_2647 0.55 +1.0 3,161,108 - pspB Shewana3_2647 0.57 -0.0 3,161,148 - pspB Shewana3_2647 0.74 +0.5 3,161,247 + -1.0 3,161,524 - Shewana3_2648 0.43 +0.7 3,161,729 + Shewana3_2648 0.73 +1.8 3,161,813 + Shewana3_2648 0.85 +1.8 3,161,852 - +2.0 3,161,950 + +0.1 3,162,158 - +0.8 3,162,524 + Shewana3_2649 0.40 +0.9 3,162,525 + Shewana3_2649 0.40 +0.0 3,162,703 + Shewana3_2649 0.56 -0.0 3,162,753 + Shewana3_2649 0.61 +1.3 3,162,805 + Shewana3_2649 0.65 -0.5 3,162,914 - Shewana3_2649 0.75 -1.4
Or see this region's nucleotide sequence