Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2648

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2645 and Shewana3_2646 are separated by 94 nucleotidesShewana3_2646 and pspB overlap by 14 nucleotidespspB and Shewana3_2648 are separated by 23 nucleotidesShewana3_2648 and Shewana3_2649 are separated by 177 nucleotides Shewana3_2645: Shewana3_2645 - protein of unknown function DUF463, YcjX family protein (RefSeq), at 3,159,047 to 3,160,507 _2645 Shewana3_2646: Shewana3_2646 - phage shock protein C, PspC (RefSeq), at 3,160,602 to 3,160,988 _2646 Shewana3_2647: pspB - phage shock protein B (RefSeq), at 3,160,975 to 3,161,208 pspB Shewana3_2648: Shewana3_2648 - phage shock protein A, PspA (RefSeq), at 3,161,232 to 3,161,915 _2648 Shewana3_2649: Shewana3_2649 - Fis family transcriptional regulator (RefSeq), at 3,162,093 to 3,163,181 _2649 Position (kb) 3161 3162Strain fitness (log2 ratio) -1 0 1 2at 3160.411 kb on + strandat 3160.411 kb on - strandat 3160.451 kb on - strandat 3160.913 kb on - strand, within Shewana3_2646at 3161.036 kb on - strand, within pspBat 3161.044 kb on - strand, within pspBat 3161.103 kb on - strand, within pspBat 3161.108 kb on - strand, within pspBat 3161.148 kb on - strand, within pspBat 3161.247 kb on + strandat 3161.524 kb on - strand, within Shewana3_2648at 3161.729 kb on + strand, within Shewana3_2648at 3161.813 kb on + strand, within Shewana3_2648at 3161.852 kb on - strandat 3161.950 kb on + strandat 3162.158 kb on - strandat 3162.524 kb on + strand, within Shewana3_2649at 3162.525 kb on + strand, within Shewana3_2649at 3162.703 kb on + strand, within Shewana3_2649at 3162.753 kb on + strand, within Shewana3_2649at 3162.805 kb on + strand, within Shewana3_2649at 3162.914 kb on - strand, within Shewana3_2649

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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3,160,411 + -0.5
3,160,411 - -0.8
3,160,451 - -0.6
3,160,913 - Shewana3_2646 0.80 +0.2
3,161,036 - pspB Shewana3_2647 0.26 +0.0
3,161,044 - pspB Shewana3_2647 0.29 +0.7
3,161,103 - pspB Shewana3_2647 0.55 +1.0
3,161,108 - pspB Shewana3_2647 0.57 -0.0
3,161,148 - pspB Shewana3_2647 0.74 +0.5
3,161,247 + -1.0
3,161,524 - Shewana3_2648 0.43 +0.7
3,161,729 + Shewana3_2648 0.73 +1.8
3,161,813 + Shewana3_2648 0.85 +1.8
3,161,852 - +2.0
3,161,950 + +0.1
3,162,158 - +0.8
3,162,524 + Shewana3_2649 0.40 +0.9
3,162,525 + Shewana3_2649 0.40 +0.0
3,162,703 + Shewana3_2649 0.56 -0.0
3,162,753 + Shewana3_2649 0.61 +1.3
3,162,805 + Shewana3_2649 0.65 -0.5
3,162,914 - Shewana3_2649 0.75 -1.4

Or see this region's nucleotide sequence