Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2464

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2462 and Shewana3_2463 are separated by 212 nucleotidesShewana3_2463 and Shewana3_2464 are separated by 96 nucleotidesShewana3_2464 and Shewana3_2465 are separated by 115 nucleotidesShewana3_2465 and Shewana3_2466 overlap by 8 nucleotides Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959 _2462 Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786 _2463 Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440 _2464 Shewana3_2465: Shewana3_2465 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 2,953,556 to 2,954,224 _2465 Shewana3_2466: Shewana3_2466 - anti-ECFsigma factor, ChrR (RefSeq), at 2,954,217 to 2,954,912 _2466 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -2 -1 0 1at 2952.327 kb on - strand, within Shewana3_2463at 2952.359 kb on + strand, within Shewana3_2463at 2952.503 kb on - strand, within Shewana3_2463at 2952.807 kb on + strandat 2952.822 kb on - strandat 2952.959 kb on + strand, within Shewana3_2464at 2953.001 kb on + strand, within Shewana3_2464at 2953.001 kb on + strand, within Shewana3_2464at 2953.009 kb on - strand, within Shewana3_2464at 2953.148 kb on + strand, within Shewana3_2464at 2953.171 kb on - strand, within Shewana3_2464at 2953.180 kb on - strand, within Shewana3_2464at 2953.421 kb on - strandat 2953.506 kb on + strandat 2953.519 kb on + strandat 2953.704 kb on - strand, within Shewana3_2465at 2953.781 kb on - strand, within Shewana3_2465at 2953.930 kb on + strand, within Shewana3_2465

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,952,327 - Shewana3_2463 0.25 +0.3
2,952,359 + Shewana3_2463 0.30 -0.1
2,952,503 - Shewana3_2463 0.54 -0.3
2,952,807 + -0.7
2,952,822 - -0.9
2,952,959 + Shewana3_2464 0.14 -0.7
2,953,001 + Shewana3_2464 0.21 -0.7
2,953,001 + Shewana3_2464 0.21 -2.1
2,953,009 - Shewana3_2464 0.23 -0.1
2,953,148 + Shewana3_2464 0.47 -0.4
2,953,171 - Shewana3_2464 0.52 -0.6
2,953,180 - Shewana3_2464 0.53 +0.5
2,953,421 - -1.1
2,953,506 + -0.3
2,953,519 + -0.8
2,953,704 - Shewana3_2465 0.22 -0.7
2,953,781 - Shewana3_2465 0.34 +0.9
2,953,930 + Shewana3_2465 0.56 -0.2

Or see this region's nucleotide sequence