Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2462 and Shewana3_2463 are separated by 212 nucleotides Shewana3_2463 and Shewana3_2464 are separated by 96 nucleotides Shewana3_2464 and Shewana3_2465 are separated by 115 nucleotides Shewana3_2465 and Shewana3_2466 overlap by 8 nucleotides
Shewana3_2462: Shewana3_2462 - response regulator receiver modulated CheW protein (RefSeq), at 2,951,015 to 2,951,959
_2462
Shewana3_2463: Shewana3_2463 - methyltransferase type 11 (RefSeq), at 2,952,172 to 2,952,786
_2463
Shewana3_2464: Shewana3_2464 - peptidase S16, lon domain-containing protein (RefSeq), at 2,952,883 to 2,953,440
_2464
Shewana3_2465: Shewana3_2465 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 2,953,556 to 2,954,224
_2465
Shewana3_2466: Shewana3_2466 - anti-ECFsigma factor, ChrR (RefSeq), at 2,954,217 to 2,954,912
_2466
Position (kb)
2952
2953
2954 Strain fitness (log2 ratio)
-2
-1
0
1 at 2952.327 kb on - strand, within Shewana3_2463 at 2952.359 kb on + strand, within Shewana3_2463 at 2952.503 kb on - strand, within Shewana3_2463 at 2952.807 kb on + strand at 2952.822 kb on - strand at 2952.959 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.001 kb on + strand, within Shewana3_2464 at 2953.009 kb on - strand, within Shewana3_2464 at 2953.148 kb on + strand, within Shewana3_2464 at 2953.171 kb on - strand, within Shewana3_2464 at 2953.180 kb on - strand, within Shewana3_2464 at 2953.421 kb on - strand at 2953.506 kb on + strand at 2953.519 kb on + strand at 2953.704 kb on - strand, within Shewana3_2465 at 2953.781 kb on - strand, within Shewana3_2465 at 2953.930 kb on + strand, within Shewana3_2465
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,952,327 - Shewana3_2463 0.25 +0.3 2,952,359 + Shewana3_2463 0.30 -0.1 2,952,503 - Shewana3_2463 0.54 -0.3 2,952,807 + -0.7 2,952,822 - -0.9 2,952,959 + Shewana3_2464 0.14 -0.7 2,953,001 + Shewana3_2464 0.21 -0.7 2,953,001 + Shewana3_2464 0.21 -2.1 2,953,009 - Shewana3_2464 0.23 -0.1 2,953,148 + Shewana3_2464 0.47 -0.4 2,953,171 - Shewana3_2464 0.52 -0.6 2,953,180 - Shewana3_2464 0.53 +0.5 2,953,421 - -1.1 2,953,506 + -0.3 2,953,519 + -0.8 2,953,704 - Shewana3_2465 0.22 -0.7 2,953,781 - Shewana3_2465 0.34 +0.9 2,953,930 + Shewana3_2465 0.56 -0.2
Or see this region's nucleotide sequence