Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2447

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2446 and Shewana3_2447 are separated by 129 nucleotidesShewana3_2447 and Shewana3_2448 are separated by 471 nucleotides Shewana3_2446: Shewana3_2446 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,932,751 to 2,935,873 _2446 Shewana3_2447: Shewana3_2447 - adenine phosphoribosyltransferase (RefSeq), at 2,936,003 to 2,936,554 _2447 Shewana3_2448: Shewana3_2448 - hypothetical protein (RefSeq), at 2,937,026 to 2,937,394 _2448 Position (kb) 2936 2937Strain fitness (log2 ratio) -1 0 1at 2935.985 kb on - strandat 2936.152 kb on - strand, within Shewana3_2447at 2936.536 kb on - strandat 2936.674 kb on + strandat 2937.174 kb on - strand, within Shewana3_2448at 2937.191 kb on + strand, within Shewana3_2448at 2937.194 kb on - strand, within Shewana3_2448at 2937.344 kb on + strand, within Shewana3_2448at 2937.476 kb on - strandat 2937.476 kb on - strandat 2937.476 kb on - strandat 2937.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,935,985 - -0.0
2,936,152 - Shewana3_2447 0.27 +1.4
2,936,536 - +1.3
2,936,674 + -0.1
2,937,174 - Shewana3_2448 0.40 +0.9
2,937,191 + Shewana3_2448 0.45 +0.9
2,937,194 - Shewana3_2448 0.46 -0.3
2,937,344 + Shewana3_2448 0.86 -0.1
2,937,476 - -0.6
2,937,476 - +0.9
2,937,476 - +1.2
2,937,476 - +0.8

Or see this region's nucleotide sequence