Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2401 and Shewana3_2402 are separated by 252 nucleotides Shewana3_2402 and Shewana3_2403 are separated by 151 nucleotides Shewana3_2403 and Shewana3_2404 are separated by 108 nucleotides Shewana3_2404 and Shewana3_2405 are separated by 20 nucleotides
Shewana3_2401: Shewana3_2401 - DNA ligase (RefSeq), at 2,879,692 to 2,880,606
_2401
Shewana3_2402: Shewana3_2402 - diacylglycerol kinase (RefSeq), at 2,880,859 to 2,881,230
_2402
Shewana3_2403: Shewana3_2403 - LysR family transcriptional regulator (RefSeq), at 2,881,382 to 2,882,239
_2403
Shewana3_2404: Shewana3_2404 - hypothetical protein (RefSeq), at 2,882,348 to 2,882,800
_2404
Shewana3_2405: Shewana3_2405 - alpha-L-glutamate ligase (RefSeq), at 2,882,821 to 2,883,837
_2405
Position (kb)
2881
2882
2883 Strain fitness (log2 ratio)
-2
-1
0
1 at 2880.816 kb on + strand at 2881.183 kb on - strand, within Shewana3_2402 at 2881.190 kb on - strand, within Shewana3_2402 at 2881.194 kb on + strand at 2881.388 kb on + strand at 2881.388 kb on - strand at 2881.450 kb on + strand at 2881.476 kb on - strand, within Shewana3_2403 at 2881.476 kb on - strand, within Shewana3_2403 at 2881.772 kb on - strand, within Shewana3_2403 at 2882.020 kb on - strand, within Shewana3_2403 at 2882.216 kb on + strand at 2882.511 kb on - strand, within Shewana3_2404 at 2882.634 kb on + strand, within Shewana3_2404 at 2882.642 kb on - strand, within Shewana3_2404 at 2882.696 kb on - strand, within Shewana3_2404 at 2882.704 kb on + strand, within Shewana3_2404 at 2882.712 kb on - strand, within Shewana3_2404 at 2882.718 kb on - strand, within Shewana3_2404 at 2882.909 kb on - strand at 2883.002 kb on - strand, within Shewana3_2405 at 2883.101 kb on + strand, within Shewana3_2405
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,880,816 + +0.4 2,881,183 - Shewana3_2402 0.87 +0.4 2,881,190 - Shewana3_2402 0.89 -1.5 2,881,194 + +0.9 2,881,388 + +0.2 2,881,388 - -0.4 2,881,450 + +0.4 2,881,476 - Shewana3_2403 0.11 +0.7 2,881,476 - Shewana3_2403 0.11 -0.6 2,881,772 - Shewana3_2403 0.45 -0.6 2,882,020 - Shewana3_2403 0.74 +0.0 2,882,216 + +0.4 2,882,511 - Shewana3_2404 0.36 +0.3 2,882,634 + Shewana3_2404 0.63 +1.1 2,882,642 - Shewana3_2404 0.65 -0.2 2,882,696 - Shewana3_2404 0.77 -0.6 2,882,704 + Shewana3_2404 0.79 -2.0 2,882,712 - Shewana3_2404 0.80 -0.5 2,882,718 - Shewana3_2404 0.82 -0.0 2,882,909 - +0.4 2,883,002 - Shewana3_2405 0.18 -1.9 2,883,101 + Shewana3_2405 0.28 -1.1
Or see this region's nucleotide sequence