Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2398

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2396 and Shewana3_2397 are separated by 286 nucleotidesShewana3_2397 and Shewana3_2398 are separated by 84 nucleotidesShewana3_2398 and Shewana3_2399 are separated by 609 nucleotides Shewana3_2396: Shewana3_2396 - hypothetical protein (RefSeq), at 2,875,448 to 2,875,888 _2396 Shewana3_2397: Shewana3_2397 - hypothetical protein (RefSeq), at 2,876,175 to 2,876,732 _2397 Shewana3_2398: Shewana3_2398 - hypothetical protein (RefSeq), at 2,876,817 to 2,877,422 _2398 Shewana3_2399: Shewana3_2399 - protein tyrosine phosphatase (RefSeq), at 2,878,032 to 2,878,547 _2399 Position (kb) 2876 2877 2878Strain fitness (log2 ratio) -1 0 1 2at 2875.940 kb on - strandat 2876.081 kb on + strandat 2876.286 kb on + strand, within Shewana3_2397at 2876.546 kb on + strand, within Shewana3_2397at 2876.705 kb on + strandat 2876.778 kb on - strandat 2876.808 kb on - strandat 2877.040 kb on - strand, within Shewana3_2398at 2877.289 kb on + strand, within Shewana3_2398at 2877.297 kb on - strand, within Shewana3_2398at 2877.833 kb on + strandat 2877.963 kb on + strandat 2878.143 kb on - strand, within Shewana3_2399at 2878.182 kb on - strand, within Shewana3_2399at 2878.348 kb on + strand, within Shewana3_2399at 2878.356 kb on - strand, within Shewana3_2399

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,875,940 - -1.3
2,876,081 + +0.5
2,876,286 + Shewana3_2397 0.20 +0.4
2,876,546 + Shewana3_2397 0.66 -0.9
2,876,705 + -0.7
2,876,778 - -0.6
2,876,808 - -0.5
2,877,040 - Shewana3_2398 0.37 +2.0
2,877,289 + Shewana3_2398 0.78 +0.4
2,877,297 - Shewana3_2398 0.79 -1.0
2,877,833 + -0.0
2,877,963 + +2.0
2,878,143 - Shewana3_2399 0.22 -0.4
2,878,182 - Shewana3_2399 0.29 -1.2
2,878,348 + Shewana3_2399 0.61 -0.4
2,878,356 - Shewana3_2399 0.63 -1.4

Or see this region's nucleotide sequence