Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2394

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2393 and Shewana3_2394 are separated by 377 nucleotidesShewana3_2394 and rbgA are separated by 136 nucleotides Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853 _2393 Shewana3_2394: Shewana3_2394 - 2OG-Fe(II) oxygenase (RefSeq), at 2,873,231 to 2,874,070 _2394 Shewana3_2395: rbgA - ribosomal biogenesis GTPase (RefSeq), at 2,874,207 to 2,875,148 rbgA Position (kb) 2873 2874 2875Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2872.416 kb on - strand, within Shewana3_2393at 2872.462 kb on - strand, within Shewana3_2393at 2872.614 kb on - strand, within Shewana3_2393at 2872.774 kb on + strandat 2872.929 kb on + strandat 2873.040 kb on + strandat 2873.058 kb on + strandat 2873.129 kb on + strandat 2873.136 kb on - strandat 2873.176 kb on + strandat 2873.269 kb on - strandat 2873.342 kb on - strand, within Shewana3_2394at 2873.361 kb on - strand, within Shewana3_2394at 2873.472 kb on + strand, within Shewana3_2394at 2873.499 kb on - strand, within Shewana3_2394at 2873.700 kb on - strand, within Shewana3_2394at 2873.753 kb on + strand, within Shewana3_2394at 2873.769 kb on - strand, within Shewana3_2394at 2873.790 kb on + strand, within Shewana3_2394at 2873.810 kb on + strand, within Shewana3_2394

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,872,416 - Shewana3_2393 0.52 +1.3
2,872,462 - Shewana3_2393 0.57 +0.8
2,872,614 - Shewana3_2393 0.74 +0.8
2,872,774 + -1.0
2,872,929 + +0.4
2,873,040 + -0.2
2,873,058 + +0.3
2,873,129 + -0.6
2,873,136 - +1.1
2,873,176 + -0.3
2,873,269 - -2.9
2,873,342 - Shewana3_2394 0.13 -1.0
2,873,361 - Shewana3_2394 0.15 +0.5
2,873,472 + Shewana3_2394 0.29 -0.6
2,873,499 - Shewana3_2394 0.32 +0.6
2,873,700 - Shewana3_2394 0.56 +1.0
2,873,753 + Shewana3_2394 0.62 +2.1
2,873,769 - Shewana3_2394 0.64 -0.2
2,873,790 + Shewana3_2394 0.67 +0.1
2,873,810 + Shewana3_2394 0.69 +1.7

Or see this region's nucleotide sequence