Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2383

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2381 and minC are separated by 123 nucleotidesminC and Shewana3_2383 are separated by 27 nucleotidesShewana3_2383 and minE are separated by 2 nucleotidesminE and Shewana3_2385 are separated by 162 nucleotides Shewana3_2381: Shewana3_2381 - hypothetical protein (RefSeq), at 2,861,404 to 2,861,682 _2381 Shewana3_2382: minC - septum formation inhibitor (RefSeq), at 2,861,806 to 2,862,471 minC Shewana3_2383: Shewana3_2383 - septum site-determining protein MinD (RefSeq), at 2,862,499 to 2,863,308 _2383 Shewana3_2384: minE - cell division topological specificity factor MinE (RefSeq), at 2,863,311 to 2,863,568 minE Shewana3_2385: Shewana3_2385 - ribonuclease D (RefSeq), at 2,863,731 to 2,864,897 _2385 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1 2at 2861.506 kb on - strand, within Shewana3_2381at 2861.642 kb on + strand, within Shewana3_2381at 2861.731 kb on + strandat 2861.739 kb on - strandat 2861.808 kb on + strandat 2861.847 kb on - strandat 2862.088 kb on - strand, within minCat 2862.088 kb on - strand, within minCat 2862.399 kb on + strand, within minCat 2862.490 kb on + strandat 2862.525 kb on + strandat 2862.926 kb on + strand, within Shewana3_2383at 2863.079 kb on + strand, within Shewana3_2383at 2863.526 kb on + strand, within minEat 2863.669 kb on + strandat 2863.677 kb on - strandat 2864.253 kb on - strand, within Shewana3_2385

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,861,506 - Shewana3_2381 0.37 +0.3
2,861,642 + Shewana3_2381 0.85 -0.0
2,861,731 + -0.4
2,861,739 - -1.0
2,861,808 + -0.0
2,861,847 - +1.0
2,862,088 - minC Shewana3_2382 0.42 +2.0
2,862,088 - minC Shewana3_2382 0.42 +2.0
2,862,399 + minC Shewana3_2382 0.89 +0.4
2,862,490 + +0.1
2,862,525 + -2.5
2,862,926 + Shewana3_2383 0.53 -1.6
2,863,079 + Shewana3_2383 0.72 -0.8
2,863,526 + minE Shewana3_2384 0.83 +1.1
2,863,669 + +1.0
2,863,677 - -0.8
2,864,253 - Shewana3_2385 0.45 -0.8

Or see this region's nucleotide sequence