Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2354 and Shewana3_2355 are separated by 12 nucleotides Shewana3_2355 and Shewana3_2356 overlap by 4 nucleotides Shewana3_2356 and Shewana3_2357 are separated by 9 nucleotides Shewana3_2357 and Shewana3_2358 are separated by 155 nucleotides Shewana3_2358 and Shewana3_2359 are separated by 78 nucleotides
Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000
_2354
Shewana3_2355: Shewana3_2355 - metal dependent phosphohydrolase (RefSeq), at 2,835,013 to 2,835,888
_2355
Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063
_2356
Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285
_2357
Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677
_2358
Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001
_2359
Position (kb)
2835
2836
2837
2838 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2835.167 kb on - strand, within Shewana3_2355 at 2835.240 kb on - strand, within Shewana3_2355 at 2835.713 kb on - strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.786 kb on + strand, within Shewana3_2355 at 2835.789 kb on - strand, within Shewana3_2355 at 2835.794 kb on - strand, within Shewana3_2355 at 2835.950 kb on - strand at 2836.040 kb on + strand, within Shewana3_2356 at 2836.126 kb on - strand, within Shewana3_2356 at 2836.270 kb on + strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.297 kb on - strand, within Shewana3_2356 at 2836.367 kb on - strand, within Shewana3_2356 at 2836.391 kb on - strand, within Shewana3_2356 at 2836.416 kb on - strand, within Shewana3_2356 at 2836.438 kb on - strand, within Shewana3_2356 at 2836.689 kb on - strand, within Shewana3_2356 at 2836.986 kb on + strand at 2837.069 kb on - strand at 2837.134 kb on - strand, within Shewana3_2357 at 2837.207 kb on + strand, within Shewana3_2357 at 2837.259 kb on + strand, within Shewana3_2357 at 2837.754 kb on - strand at 2837.874 kb on + strand, within Shewana3_2359 at 2837.936 kb on - strand, within Shewana3_2359
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,835,167 - Shewana3_2355 0.18 +1.1 2,835,240 - Shewana3_2355 0.26 -0.3 2,835,713 - Shewana3_2355 0.80 -0.6 2,835,786 + Shewana3_2355 0.88 -0.5 2,835,786 + Shewana3_2355 0.88 +0.5 2,835,789 - Shewana3_2355 0.89 +0.1 2,835,794 - Shewana3_2355 0.89 -0.9 2,835,950 - -1.0 2,836,040 + Shewana3_2356 0.13 +3.1 2,836,126 - Shewana3_2356 0.20 +0.1 2,836,270 + Shewana3_2356 0.33 -0.3 2,836,297 - Shewana3_2356 0.35 -1.0 2,836,297 - Shewana3_2356 0.35 -0.1 2,836,367 - Shewana3_2356 0.41 -1.9 2,836,391 - Shewana3_2356 0.43 -0.2 2,836,416 - Shewana3_2356 0.45 +0.1 2,836,438 - Shewana3_2356 0.47 +0.8 2,836,689 - Shewana3_2356 0.68 +0.1 2,836,986 + +2.1 2,837,069 - -0.1 2,837,134 - Shewana3_2357 0.29 +1.9 2,837,207 + Shewana3_2357 0.63 +2.1 2,837,259 + Shewana3_2357 0.87 -0.4 2,837,754 - -1.9 2,837,874 + Shewana3_2359 0.48 +1.5 2,837,936 - Shewana3_2359 0.73 -1.4
Or see this region's nucleotide sequence