Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2261

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2260 and Shewana3_2261 are separated by 433 nucleotidesShewana3_2261 and Shewana3_2262 are separated by 273 nucleotides Shewana3_2260: Shewana3_2260 - hypothetical protein (RefSeq), at 2,721,519 to 2,722,034 _2260 Shewana3_2261: Shewana3_2261 - hypothetical protein (RefSeq), at 2,722,468 to 2,723,460 _2261 Shewana3_2262: Shewana3_2262 - glutathione S-transferase domain-containing protein (RefSeq), at 2,723,734 to 2,724,405 _2262 Position (kb) 2722 2723 2724Strain fitness (log2 ratio) -2 -1 0 1 2at 2721.476 kb on + strandat 2721.766 kb on - strand, within Shewana3_2260at 2723.113 kb on - strand, within Shewana3_2261at 2723.513 kb on - strandat 2723.521 kb on + strandat 2723.732 kb on - strandat 2723.739 kb on - strandat 2723.757 kb on - strandat 2723.873 kb on + strand, within Shewana3_2262at 2723.895 kb on - strand, within Shewana3_2262at 2723.938 kb on - strand, within Shewana3_2262at 2724.178 kb on - strand, within Shewana3_2262at 2724.198 kb on - strand, within Shewana3_2262at 2724.220 kb on + strand, within Shewana3_2262

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,721,476 + +2.1
2,721,766 - Shewana3_2260 0.48 +2.1
2,723,113 - Shewana3_2261 0.65 +1.0
2,723,513 - +1.5
2,723,521 + +1.1
2,723,732 - +1.7
2,723,739 - +1.7
2,723,757 - +0.1
2,723,873 + Shewana3_2262 0.21 -0.0
2,723,895 - Shewana3_2262 0.24 +0.1
2,723,938 - Shewana3_2262 0.30 +0.3
2,724,178 - Shewana3_2262 0.66 -2.0
2,724,198 - Shewana3_2262 0.69 +2.1
2,724,220 + Shewana3_2262 0.72 -0.3

Or see this region's nucleotide sequence