Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2190

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2188 and Shewana3_2189 overlap by 8 nucleotidesShewana3_2189 and Shewana3_2190 are separated by 191 nucleotidesShewana3_2190 and Shewana3_2191 are separated by 287 nucleotides Shewana3_2188: Shewana3_2188 - hypothetical protein (RefSeq), at 2,626,142 to 2,629,153 _2188 Shewana3_2189: Shewana3_2189 - hypothetical protein (RefSeq), at 2,629,146 to 2,629,949 _2189 Shewana3_2190: Shewana3_2190 - hypothetical protein (RefSeq), at 2,630,141 to 2,631,034 _2190 Shewana3_2191: Shewana3_2191 - IS4 family transposase (RefSeq), at 2,631,322 to 2,632,935 _2191 Position (kb) 2630 2631 2632Strain fitness (log2 ratio) -1 0 1 2at 2629.153 kb on + strandat 2629.265 kb on - strand, within Shewana3_2189at 2629.283 kb on + strand, within Shewana3_2189at 2629.318 kb on - strand, within Shewana3_2189at 2629.348 kb on + strand, within Shewana3_2189at 2629.356 kb on - strand, within Shewana3_2189at 2629.374 kb on - strand, within Shewana3_2189at 2629.436 kb on + strand, within Shewana3_2189at 2629.534 kb on - strand, within Shewana3_2189at 2629.633 kb on - strand, within Shewana3_2189at 2629.641 kb on + strand, within Shewana3_2189at 2629.641 kb on + strand, within Shewana3_2189at 2629.649 kb on - strand, within Shewana3_2189at 2629.649 kb on - strand, within Shewana3_2189at 2629.649 kb on - strand, within Shewana3_2189at 2629.749 kb on - strand, within Shewana3_2189at 2629.756 kb on - strand, within Shewana3_2189at 2629.758 kb on + strand, within Shewana3_2189at 2630.151 kb on + strandat 2630.209 kb on + strandat 2630.398 kb on + strand, within Shewana3_2190at 2630.408 kb on + strand, within Shewana3_2190at 2630.408 kb on + strand, within Shewana3_2190at 2630.446 kb on + strand, within Shewana3_2190at 2630.661 kb on + strand, within Shewana3_2190at 2630.716 kb on + strand, within Shewana3_2190at 2630.757 kb on + strand, within Shewana3_2190at 2630.820 kb on + strand, within Shewana3_2190at 2631.101 kb on + strandat 2631.118 kb on + strandat 2631.128 kb on + strandat 2631.213 kb on + strandat 2631.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,629,153 + +1.1
2,629,265 - Shewana3_2189 0.15 +0.3
2,629,283 + Shewana3_2189 0.17 +1.1
2,629,318 - Shewana3_2189 0.21 -0.2
2,629,348 + Shewana3_2189 0.25 +0.6
2,629,356 - Shewana3_2189 0.26 -0.4
2,629,374 - Shewana3_2189 0.28 +0.5
2,629,436 + Shewana3_2189 0.36 +2.1
2,629,534 - Shewana3_2189 0.48 +2.1
2,629,633 - Shewana3_2189 0.61 +1.1
2,629,641 + Shewana3_2189 0.62 -1.4
2,629,641 + Shewana3_2189 0.62 +0.5
2,629,649 - Shewana3_2189 0.63 +0.1
2,629,649 - Shewana3_2189 0.63 -0.2
2,629,649 - Shewana3_2189 0.63 +1.1
2,629,749 - Shewana3_2189 0.75 -0.9
2,629,756 - Shewana3_2189 0.76 +0.1
2,629,758 + Shewana3_2189 0.76 +0.1
2,630,151 + +0.9
2,630,209 + +0.1
2,630,398 + Shewana3_2190 0.29 +0.9
2,630,408 + Shewana3_2190 0.30 +1.9
2,630,408 + Shewana3_2190 0.30 +1.9
2,630,446 + Shewana3_2190 0.34 +1.1
2,630,661 + Shewana3_2190 0.58 +0.4
2,630,716 + Shewana3_2190 0.64 +0.3
2,630,757 + Shewana3_2190 0.69 +1.1
2,630,820 + Shewana3_2190 0.76 +0.8
2,631,101 + -1.1
2,631,118 + -1.2
2,631,128 + -1.4
2,631,213 + -0.2
2,631,213 + +2.1

Or see this region's nucleotide sequence