Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2188 and Shewana3_2189 overlap by 8 nucleotides Shewana3_2189 and Shewana3_2190 are separated by 191 nucleotides Shewana3_2190 and Shewana3_2191 are separated by 287 nucleotides
Shewana3_2188: Shewana3_2188 - hypothetical protein (RefSeq), at 2,626,142 to 2,629,153
_2188
Shewana3_2189: Shewana3_2189 - hypothetical protein (RefSeq), at 2,629,146 to 2,629,949
_2189
Shewana3_2190: Shewana3_2190 - hypothetical protein (RefSeq), at 2,630,141 to 2,631,034
_2190
Shewana3_2191: Shewana3_2191 - IS4 family transposase (RefSeq), at 2,631,322 to 2,632,935
_2191
Position (kb)
2630
2631
2632 Strain fitness (log2 ratio)
-1
0
1
2 at 2629.153 kb on + strand at 2629.265 kb on - strand, within Shewana3_2189 at 2629.283 kb on + strand, within Shewana3_2189 at 2629.318 kb on - strand, within Shewana3_2189 at 2629.348 kb on + strand, within Shewana3_2189 at 2629.356 kb on - strand, within Shewana3_2189 at 2629.374 kb on - strand, within Shewana3_2189 at 2629.436 kb on + strand, within Shewana3_2189 at 2629.534 kb on - strand, within Shewana3_2189 at 2629.633 kb on - strand, within Shewana3_2189 at 2629.641 kb on + strand, within Shewana3_2189 at 2629.641 kb on + strand, within Shewana3_2189 at 2629.649 kb on - strand, within Shewana3_2189 at 2629.649 kb on - strand, within Shewana3_2189 at 2629.649 kb on - strand, within Shewana3_2189 at 2629.749 kb on - strand, within Shewana3_2189 at 2629.756 kb on - strand, within Shewana3_2189 at 2629.758 kb on + strand, within Shewana3_2189 at 2630.151 kb on + strand at 2630.209 kb on + strand at 2630.398 kb on + strand, within Shewana3_2190 at 2630.408 kb on + strand, within Shewana3_2190 at 2630.408 kb on + strand, within Shewana3_2190 at 2630.446 kb on + strand, within Shewana3_2190 at 2630.661 kb on + strand, within Shewana3_2190 at 2630.716 kb on + strand, within Shewana3_2190 at 2630.757 kb on + strand, within Shewana3_2190 at 2630.820 kb on + strand, within Shewana3_2190 at 2631.101 kb on + strand at 2631.118 kb on + strand at 2631.128 kb on + strand at 2631.213 kb on + strand at 2631.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,629,153 + +1.1 2,629,265 - Shewana3_2189 0.15 +0.3 2,629,283 + Shewana3_2189 0.17 +1.1 2,629,318 - Shewana3_2189 0.21 -0.2 2,629,348 + Shewana3_2189 0.25 +0.6 2,629,356 - Shewana3_2189 0.26 -0.4 2,629,374 - Shewana3_2189 0.28 +0.5 2,629,436 + Shewana3_2189 0.36 +2.1 2,629,534 - Shewana3_2189 0.48 +2.1 2,629,633 - Shewana3_2189 0.61 +1.1 2,629,641 + Shewana3_2189 0.62 -1.4 2,629,641 + Shewana3_2189 0.62 +0.5 2,629,649 - Shewana3_2189 0.63 +0.1 2,629,649 - Shewana3_2189 0.63 -0.2 2,629,649 - Shewana3_2189 0.63 +1.1 2,629,749 - Shewana3_2189 0.75 -0.9 2,629,756 - Shewana3_2189 0.76 +0.1 2,629,758 + Shewana3_2189 0.76 +0.1 2,630,151 + +0.9 2,630,209 + +0.1 2,630,398 + Shewana3_2190 0.29 +0.9 2,630,408 + Shewana3_2190 0.30 +1.9 2,630,408 + Shewana3_2190 0.30 +1.9 2,630,446 + Shewana3_2190 0.34 +1.1 2,630,661 + Shewana3_2190 0.58 +0.4 2,630,716 + Shewana3_2190 0.64 +0.3 2,630,757 + Shewana3_2190 0.69 +1.1 2,630,820 + Shewana3_2190 0.76 +0.8 2,631,101 + -1.1 2,631,118 + -1.2 2,631,128 + -1.4 2,631,213 + -0.2 2,631,213 + +2.1
Or see this region's nucleotide sequence