Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2155

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2154 and Shewana3_2155 are separated by 15 nucleotidesShewana3_2155 and Shewana3_2156 are separated by 218 nucleotides Shewana3_2154: Shewana3_2154 - acyl-CoA dehydrogenase (RefSeq), at 2,580,903 to 2,583,182 _2154 Shewana3_2155: Shewana3_2155 - TetR family transcriptional regulator (RefSeq), at 2,583,198 to 2,583,836 _2155 Shewana3_2156: Shewana3_2156 - peptidase M2, peptidyl-dipeptidase A (RefSeq), at 2,584,055 to 2,585,914 _2156 Position (kb) 2583 2584Strain fitness (log2 ratio) -1 0 1 2 3at 2582.451 kb on + strand, within Shewana3_2154at 2582.614 kb on + strand, within Shewana3_2154at 2582.617 kb on - strand, within Shewana3_2154at 2582.692 kb on - strand, within Shewana3_2154at 2582.838 kb on + strand, within Shewana3_2154at 2582.916 kb on - strand, within Shewana3_2154at 2582.978 kb on - strandat 2583.183 kb on + strandat 2583.442 kb on - strand, within Shewana3_2155at 2583.554 kb on - strand, within Shewana3_2155at 2583.566 kb on - strand, within Shewana3_2155at 2583.655 kb on - strand, within Shewana3_2155at 2583.668 kb on - strand, within Shewana3_2155at 2583.668 kb on - strand, within Shewana3_2155at 2584.093 kb on + strandat 2584.093 kb on + strandat 2584.093 kb on + strandat 2584.095 kb on + strandat 2584.103 kb on - strandat 2584.107 kb on + strandat 2584.115 kb on - strandat 2584.201 kb on - strandat 2584.438 kb on - strand, within Shewana3_2156at 2584.504 kb on + strand, within Shewana3_2156at 2584.517 kb on + strand, within Shewana3_2156at 2584.517 kb on + strand, within Shewana3_2156at 2584.525 kb on - strand, within Shewana3_2156at 2584.551 kb on - strand, within Shewana3_2156at 2584.673 kb on - strand, within Shewana3_2156

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,582,451 + Shewana3_2154 0.68 -1.1
2,582,614 + Shewana3_2154 0.75 +2.1
2,582,617 - Shewana3_2154 0.75 -0.5
2,582,692 - Shewana3_2154 0.78 -0.5
2,582,838 + Shewana3_2154 0.85 +0.5
2,582,916 - Shewana3_2154 0.88 +0.6
2,582,978 - +0.4
2,583,183 + +2.1
2,583,442 - Shewana3_2155 0.38 -0.2
2,583,554 - Shewana3_2155 0.56 +2.2
2,583,566 - Shewana3_2155 0.58 +1.6
2,583,655 - Shewana3_2155 0.72 +0.4
2,583,668 - Shewana3_2155 0.74 +1.9
2,583,668 - Shewana3_2155 0.74 +1.5
2,584,093 + +2.1
2,584,093 + -1.2
2,584,093 + +0.3
2,584,095 + -1.0
2,584,103 - +0.5
2,584,107 + -1.3
2,584,115 - -0.2
2,584,201 - -0.7
2,584,438 - Shewana3_2156 0.21 +1.5
2,584,504 + Shewana3_2156 0.24 +0.2
2,584,517 + Shewana3_2156 0.25 +0.5
2,584,517 + Shewana3_2156 0.25 -0.5
2,584,525 - Shewana3_2156 0.25 +3.1
2,584,551 - Shewana3_2156 0.27 +0.5
2,584,673 - Shewana3_2156 0.33 +0.1

Or see this region's nucleotide sequence