Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2089 and Shewana3_2090 are separated by 2 nucleotides Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides Shewana3_2091 and Shewana3_2092 are separated by 2 nucleotides
Shewana3_2089: Shewana3_2089 - formate dehydrogenase alpha subunit (RefSeq), at 2,506,781 to 2,509,798
_2089
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Shewana3_2092: Shewana3_2092 - formate dehydrogenase accessory protein FdhE (RefSeq), at 2,511,326 to 2,512,225
_2092
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2508.895 kb on + strand, within Shewana3_2089 at 2509.119 kb on + strand, within Shewana3_2089 at 2509.142 kb on - strand, within Shewana3_2089 at 2509.166 kb on - strand, within Shewana3_2089 at 2509.297 kb on + strand, within Shewana3_2089 at 2509.329 kb on + strand, within Shewana3_2089 at 2509.563 kb on + strand at 2509.599 kb on - strand at 2509.722 kb on - strand at 2510.103 kb on - strand, within Shewana3_2090 at 2510.108 kb on - strand, within Shewana3_2090 at 2510.128 kb on - strand, within Shewana3_2090 at 2510.132 kb on + strand, within Shewana3_2090 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090 at 2510.820 kb on - strand, within Shewana3_2091 at 2510.984 kb on - strand, within Shewana3_2091 at 2511.078 kb on + strand, within Shewana3_2091 at 2511.115 kb on - strand, within Shewana3_2091 at 2511.154 kb on + strand, within Shewana3_2091 at 2511.209 kb on - strand, within Shewana3_2091 at 2511.269 kb on + strand at 2511.604 kb on - strand, within Shewana3_2092 at 2511.671 kb on + strand, within Shewana3_2092 at 2511.681 kb on + strand, within Shewana3_2092 at 2511.691 kb on + strand, within Shewana3_2092
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,508,895 + Shewana3_2089 0.70 +0.1 2,509,119 + Shewana3_2089 0.77 -2.1 2,509,142 - Shewana3_2089 0.78 +0.1 2,509,166 - Shewana3_2089 0.79 -0.2 2,509,297 + Shewana3_2089 0.83 -0.7 2,509,329 + Shewana3_2089 0.84 +2.1 2,509,563 + +0.5 2,509,599 - +1.5 2,509,722 - -1.1 2,510,103 - Shewana3_2090 0.33 +2.1 2,510,108 - Shewana3_2090 0.34 +1.1 2,510,128 - Shewana3_2090 0.36 +0.4 2,510,132 + Shewana3_2090 0.37 +0.1 2,510,426 + Shewana3_2090 0.69 +1.4 2,510,569 + Shewana3_2090 0.85 -2.5 2,510,820 - Shewana3_2091 0.19 +3.1 2,510,984 - Shewana3_2091 0.46 +1.1 2,511,078 + Shewana3_2091 0.61 -1.1 2,511,115 - Shewana3_2091 0.67 +1.1 2,511,154 + Shewana3_2091 0.73 +1.3 2,511,209 - Shewana3_2091 0.82 +0.1 2,511,269 + -0.5 2,511,604 - Shewana3_2092 0.31 +1.0 2,511,671 + Shewana3_2092 0.38 +0.1 2,511,681 + Shewana3_2092 0.39 +0.5 2,511,691 + Shewana3_2092 0.41 -0.6
Or see this region's nucleotide sequence