Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2085

Experiment: Chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2084 and Shewana3_2085 are separated by 179 nucleotidesShewana3_2085 and Shewana3_2086 are separated by 586 nucleotides Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336 _2084 Shewana3_2085: Shewana3_2085 - TonB-dependent receptor (RefSeq), at 2,497,516 to 2,500,353 _2085 Shewana3_2086: Shewana3_2086 - beta-xylosidase-like protein (RefSeq), at 2,500,940 to 2,504,305 _2086 Position (kb) 2497 2498 2499 2500 2501Strain fitness (log2 ratio) -2 -1 0 1 2at 2496.685 kb on + strand, within Shewana3_2084at 2496.704 kb on - strand, within Shewana3_2084at 2496.725 kb on + strand, within Shewana3_2084at 2496.766 kb on - strand, within Shewana3_2084at 2497.067 kb on - strand, within Shewana3_2084at 2497.141 kb on - strand, within Shewana3_2084at 2497.362 kb on - strandat 2497.428 kb on + strandat 2497.436 kb on - strandat 2497.523 kb on + strandat 2497.552 kb on + strandat 2497.692 kb on + strandat 2497.705 kb on - strandat 2497.991 kb on - strand, within Shewana3_2085at 2498.078 kb on - strand, within Shewana3_2085at 2498.262 kb on - strand, within Shewana3_2085at 2498.361 kb on + strand, within Shewana3_2085at 2498.608 kb on - strand, within Shewana3_2085at 2498.627 kb on + strand, within Shewana3_2085at 2499.255 kb on - strandat 2499.351 kb on + strand, within Shewana3_2085at 2499.359 kb on - strand, within Shewana3_2085at 2499.531 kb on + strand, within Shewana3_2085at 2499.555 kb on + strand, within Shewana3_2085at 2499.578 kb on + strand, within Shewana3_2085at 2499.964 kb on + strand, within Shewana3_2085at 2500.074 kb on - strandat 2500.189 kb on - strandat 2500.232 kb on + strandat 2501.037 kb on + strandat 2501.053 kb on + strandat 2501.245 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
remove
2,496,685 + Shewana3_2084 0.14 -0.2
2,496,704 - Shewana3_2084 0.16 -2.5
2,496,725 + Shewana3_2084 0.19 +2.1
2,496,766 - Shewana3_2084 0.24 -0.5
2,497,067 - Shewana3_2084 0.64 +0.5
2,497,141 - Shewana3_2084 0.74 -2.2
2,497,362 - -0.2
2,497,428 + +0.5
2,497,436 - +0.1
2,497,523 + +2.1
2,497,552 + +2.1
2,497,692 + +0.1
2,497,705 - -0.9
2,497,991 - Shewana3_2085 0.17 +0.9
2,498,078 - Shewana3_2085 0.20 -1.2
2,498,262 - Shewana3_2085 0.26 -1.1
2,498,361 + Shewana3_2085 0.30 +1.1
2,498,608 - Shewana3_2085 0.38 -1.4
2,498,627 + Shewana3_2085 0.39 +0.1
2,499,255 - +0.5
2,499,351 + Shewana3_2085 0.65 -0.7
2,499,359 - Shewana3_2085 0.65 -0.9
2,499,531 + Shewana3_2085 0.71 +0.5
2,499,555 + Shewana3_2085 0.72 -1.1
2,499,578 + Shewana3_2085 0.73 -0.5
2,499,964 + Shewana3_2085 0.86 +1.1
2,500,074 - +0.1
2,500,189 - +0.5
2,500,232 + +0.2
2,501,037 + +1.1
2,501,053 + -0.8
2,501,245 + -0.7

Or see this region's nucleotide sequence