Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2084

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2083 and Shewana3_2084 are separated by 179 nucleotidesShewana3_2084 and Shewana3_2085 are separated by 179 nucleotides Shewana3_2083: Shewana3_2083 - glycoside hydrolase family protein (RefSeq), at 2,494,497 to 2,496,401 _2083 Shewana3_2084: Shewana3_2084 - permease (RefSeq), at 2,496,581 to 2,497,336 _2084 Shewana3_2085: Shewana3_2085 - TonB-dependent receptor (RefSeq), at 2,497,516 to 2,500,353 _2085 Position (kb) 2496 2497 2498Strain fitness (log2 ratio) -2 -1 0 1 2at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.643 kb on + strand, within Shewana3_2083at 2495.651 kb on - strand, within Shewana3_2083at 2495.671 kb on - strand, within Shewana3_2083at 2495.782 kb on - strand, within Shewana3_2083at 2495.784 kb on + strand, within Shewana3_2083at 2495.786 kb on + strand, within Shewana3_2083at 2495.822 kb on + strand, within Shewana3_2083at 2495.980 kb on - strand, within Shewana3_2083at 2496.044 kb on + strand, within Shewana3_2083at 2496.113 kb on + strand, within Shewana3_2083at 2496.161 kb on + strand, within Shewana3_2083at 2496.413 kb on + strandat 2496.416 kb on - strandat 2496.513 kb on + strandat 2496.685 kb on + strand, within Shewana3_2084at 2496.704 kb on - strand, within Shewana3_2084at 2496.725 kb on + strand, within Shewana3_2084at 2496.766 kb on - strand, within Shewana3_2084at 2497.067 kb on - strand, within Shewana3_2084at 2497.141 kb on - strand, within Shewana3_2084at 2497.362 kb on - strandat 2497.428 kb on + strandat 2497.436 kb on - strandat 2497.523 kb on + strandat 2497.552 kb on + strandat 2497.692 kb on + strandat 2497.705 kb on - strandat 2497.991 kb on - strand, within Shewana3_2085at 2498.078 kb on - strand, within Shewana3_2085at 2498.262 kb on - strand, within Shewana3_2085

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,495,643 + Shewana3_2083 0.60 -0.1
2,495,643 + Shewana3_2083 0.60 +0.8
2,495,643 + Shewana3_2083 0.60 +0.1
2,495,643 + Shewana3_2083 0.60 -0.2
2,495,651 - Shewana3_2083 0.61 +1.1
2,495,671 - Shewana3_2083 0.62 +1.5
2,495,782 - Shewana3_2083 0.67 +0.5
2,495,784 + Shewana3_2083 0.68 +1.5
2,495,786 + Shewana3_2083 0.68 +0.4
2,495,822 + Shewana3_2083 0.70 -0.1
2,495,980 - Shewana3_2083 0.78 -0.2
2,496,044 + Shewana3_2083 0.81 -0.3
2,496,113 + Shewana3_2083 0.85 -1.1
2,496,161 + Shewana3_2083 0.87 +0.2
2,496,413 + +0.3
2,496,416 - +0.1
2,496,513 + +1.2
2,496,685 + Shewana3_2084 0.14 -0.2
2,496,704 - Shewana3_2084 0.16 -2.5
2,496,725 + Shewana3_2084 0.19 +2.1
2,496,766 - Shewana3_2084 0.24 -0.5
2,497,067 - Shewana3_2084 0.64 +0.5
2,497,141 - Shewana3_2084 0.74 -2.2
2,497,362 - -0.2
2,497,428 + +0.5
2,497,436 - +0.1
2,497,523 + +2.1
2,497,552 + +2.1
2,497,692 + +0.1
2,497,705 - -0.9
2,497,991 - Shewana3_2085 0.17 +0.9
2,498,078 - Shewana3_2085 0.20 -1.2
2,498,262 - Shewana3_2085 0.26 -1.1

Or see this region's nucleotide sequence