Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1888

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoG and Shewana3_1888 are separated by 23 nucleotidesShewana3_1888 and Shewana3_1889 are separated by 230 nucleotides Shewana3_1887: mdoG - glucan biosynthesis protein G (RefSeq), at 2,234,754 to 2,236,391 mdoG Shewana3_1888: Shewana3_1888 - glucosyltransferase MdoH (RefSeq), at 2,236,415 to 2,238,598 _1888 Shewana3_1889: Shewana3_1889 - peptidoglycan binding domain-containing protein (RefSeq), at 2,238,829 to 2,240,505 _1889 Position (kb) 2236 2237 2238 2239Strain fitness (log2 ratio) -1 0 1 2at 2236.013 kb on + strand, within mdoGat 2236.082 kb on + strand, within mdoGat 2236.211 kb on + strand, within mdoGat 2236.793 kb on - strand, within Shewana3_1888at 2236.875 kb on - strand, within Shewana3_1888at 2237.412 kb on + strand, within Shewana3_1888at 2237.480 kb on + strand, within Shewana3_1888at 2237.565 kb on + strand, within Shewana3_1888at 2238.243 kb on + strand, within Shewana3_1888at 2238.322 kb on + strand, within Shewana3_1888at 2238.330 kb on - strand, within Shewana3_1888at 2238.702 kb on + strandat 2238.716 kb on + strandat 2238.743 kb on - strandat 2238.824 kb on + strandat 2238.889 kb on + strandat 2238.953 kb on - strandat 2238.998 kb on + strand, within Shewana3_1889at 2239.138 kb on - strand, within Shewana3_1889at 2239.568 kb on + strand, within Shewana3_1889at 2239.578 kb on + strand, within Shewana3_1889at 2239.595 kb on - strand, within Shewana3_1889

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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2,236,013 + mdoG Shewana3_1887 0.77 -0.7
2,236,082 + mdoG Shewana3_1887 0.81 -1.3
2,236,211 + mdoG Shewana3_1887 0.89 +0.4
2,236,793 - Shewana3_1888 0.17 +1.0
2,236,875 - Shewana3_1888 0.21 +2.0
2,237,412 + Shewana3_1888 0.46 +1.0
2,237,480 + Shewana3_1888 0.49 +1.2
2,237,565 + Shewana3_1888 0.53 -0.7
2,238,243 + Shewana3_1888 0.84 +1.2
2,238,322 + Shewana3_1888 0.87 -0.3
2,238,330 - Shewana3_1888 0.88 +1.0
2,238,702 + +2.0
2,238,716 + +2.0
2,238,743 - -0.6
2,238,824 + -0.8
2,238,889 + -0.6
2,238,953 - -0.6
2,238,998 + Shewana3_1889 0.10 +0.4
2,239,138 - Shewana3_1889 0.18 -0.3
2,239,568 + Shewana3_1889 0.44 +0.2
2,239,578 + Shewana3_1889 0.45 +1.0
2,239,595 - Shewana3_1889 0.46 -0.3

Or see this region's nucleotide sequence