Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1834 and Shewana3_1835 are separated by 283 nucleotides Shewana3_1835 and Shewana3_1836 are separated by 87 nucleotides
Shewana3_1834: Shewana3_1834 - hypothetical protein (RefSeq), at 2,175,298 to 2,175,942
_1834
Shewana3_1835: Shewana3_1835 - FAD dependent oxidoreductase (RefSeq), at 2,176,226 to 2,177,515
_1835
Shewana3_1836: Shewana3_1836 - LysR family transcriptional regulator (RefSeq), at 2,177,603 to 2,178,484
_1836
Position (kb)
2176
2177
2178 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2175.518 kb on + strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.593 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.900 kb on - strand at 2176.041 kb on + strand at 2176.049 kb on - strand at 2176.113 kb on - strand at 2176.510 kb on - strand, within Shewana3_1835 at 2176.619 kb on + strand, within Shewana3_1835 at 2176.698 kb on + strand, within Shewana3_1835 at 2176.725 kb on + strand, within Shewana3_1835 at 2176.914 kb on - strand, within Shewana3_1835 at 2176.973 kb on - strand, within Shewana3_1835 at 2177.215 kb on + strand, within Shewana3_1835 at 2177.215 kb on + strand, within Shewana3_1835 at 2177.230 kb on - strand, within Shewana3_1835 at 2177.467 kb on - strand at 2177.493 kb on - strand at 2177.676 kb on - strand at 2177.793 kb on + strand, within Shewana3_1836 at 2177.809 kb on - strand, within Shewana3_1836 at 2178.008 kb on + strand, within Shewana3_1836 at 2178.253 kb on + strand, within Shewana3_1836 at 2178.301 kb on + strand, within Shewana3_1836 at 2178.383 kb on + strand, within Shewana3_1836 at 2178.403 kb on + strand at 2178.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 2,175,518 + Shewana3_1834 0.34 -1.2 2,175,526 - Shewana3_1834 0.35 +0.7 2,175,526 - Shewana3_1834 0.35 +2.0 2,175,591 + Shewana3_1834 0.45 +0.7 2,175,591 + Shewana3_1834 0.45 +1.0 2,175,593 + Shewana3_1834 0.46 +0.2 2,175,635 + Shewana3_1834 0.52 +0.5 2,175,635 + Shewana3_1834 0.52 +2.2 2,175,841 + Shewana3_1834 0.84 -0.6 2,175,841 + Shewana3_1834 0.84 +1.0 2,175,900 - +1.0 2,176,041 + +0.4 2,176,049 - -0.6 2,176,113 - -1.2 2,176,510 - Shewana3_1835 0.22 +0.3 2,176,619 + Shewana3_1835 0.30 +1.3 2,176,698 + Shewana3_1835 0.37 -1.9 2,176,725 + Shewana3_1835 0.39 +0.7 2,176,914 - Shewana3_1835 0.53 +0.0 2,176,973 - Shewana3_1835 0.58 +2.0 2,177,215 + Shewana3_1835 0.77 +0.3 2,177,215 + Shewana3_1835 0.77 +0.8 2,177,230 - Shewana3_1835 0.78 +2.6 2,177,467 - +2.0 2,177,493 - +1.4 2,177,676 - -2.1 2,177,793 + Shewana3_1836 0.22 -0.9 2,177,809 - Shewana3_1836 0.23 +0.8 2,178,008 + Shewana3_1836 0.46 +2.0 2,178,253 + Shewana3_1836 0.74 -0.9 2,178,301 + Shewana3_1836 0.79 -2.0 2,178,383 + Shewana3_1836 0.88 +1.9 2,178,403 + -0.6 2,178,479 - -1.5
Or see this region's nucleotide sequence