Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1660 and Shewana3_1661 overlap by 1 nucleotides Shewana3_1661 and Shewana3_1662 are separated by 72 nucleotides Shewana3_1662 and Shewana3_1663 are separated by 225 nucleotides Shewana3_1663 and Shewana3_1664 are separated by 35 nucleotides
Shewana3_1660: Shewana3_1660 - GCN5-related N-acetyltransferase (RefSeq), at 1,952,884 to 1,953,318
_1660
Shewana3_1661: Shewana3_1661 - negative transcriptional regulator (RefSeq), at 1,953,318 to 1,954,001
_1661
Shewana3_1662: Shewana3_1662 - hypothetical protein (RefSeq), at 1,954,074 to 1,954,829
_1662
Shewana3_1663: Shewana3_1663 - hypothetical protein (RefSeq), at 1,955,055 to 1,955,366
_1663
Shewana3_1664: Shewana3_1664 - ThiJ/PfpI domain-containing protein (RefSeq), at 1,955,402 to 1,956,004
_1664
Position (kb) 1954
1955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1953.078 kb on + strand, within Shewana3_1660 at 1953.239 kb on - strand, within Shewana3_1660 at 1953.280 kb on - strand at 1953.401 kb on + strand, within Shewana3_1661 at 1953.431 kb on - strand, within Shewana3_1661 at 1953.665 kb on - strand, within Shewana3_1661 at 1953.833 kb on - strand, within Shewana3_1661 at 1953.845 kb on + strand, within Shewana3_1661 at 1953.845 kb on + strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.853 kb on - strand, within Shewana3_1661 at 1953.967 kb on + strand at 1953.967 kb on + strand at 1954.165 kb on + strand, within Shewana3_1662 at 1954.213 kb on - strand, within Shewana3_1662 at 1954.228 kb on + strand, within Shewana3_1662 at 1954.269 kb on - strand, within Shewana3_1662 at 1954.269 kb on - strand, within Shewana3_1662 at 1954.328 kb on + strand, within Shewana3_1662 at 1954.328 kb on + strand, within Shewana3_1662 at 1954.552 kb on + strand, within Shewana3_1662 at 1954.794 kb on + strand at 1954.990 kb on + strand at 1955.207 kb on - strand, within Shewana3_1663
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,953,078 + Shewana3_1660 0.45 +1.9 1,953,239 - Shewana3_1660 0.82 +0.6 1,953,280 - +1.3 1,953,401 + Shewana3_1661 0.12 -0.3 1,953,431 - Shewana3_1661 0.17 -0.4 1,953,665 - Shewana3_1661 0.51 -0.9 1,953,833 - Shewana3_1661 0.75 +0.1 1,953,845 + Shewana3_1661 0.77 +0.4 1,953,845 + Shewana3_1661 0.77 +0.4 1,953,853 - Shewana3_1661 0.78 +0.1 1,953,853 - Shewana3_1661 0.78 -0.4 1,953,853 - Shewana3_1661 0.78 +0.0 1,953,853 - Shewana3_1661 0.78 +0.4 1,953,853 - Shewana3_1661 0.78 -0.1 1,953,967 + +0.4 1,953,967 + +0.4 1,954,165 + Shewana3_1662 0.12 -0.6 1,954,213 - Shewana3_1662 0.18 +0.4 1,954,228 + Shewana3_1662 0.20 -2.3 1,954,269 - Shewana3_1662 0.26 -1.0 1,954,269 - Shewana3_1662 0.26 -1.2 1,954,328 + Shewana3_1662 0.34 +1.9 1,954,328 + Shewana3_1662 0.34 -0.1 1,954,552 + Shewana3_1662 0.63 +0.4 1,954,794 + +0.1 1,954,990 + +0.9 1,955,207 - Shewana3_1663 0.49 +0.6
Or see this region's nucleotide sequence