Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1624

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1624 and Shewana3_1625 are separated by 295 nucleotides Shewana3_1624: Shewana3_1624 - arginine decarboxylase (RefSeq), at 1,911,885 to 1,913,798 _1624 Shewana3_1625: Shewana3_1625 - S-adenosylmethionine decarboxylase (RefSeq), at 1,914,094 to 1,915,029 _1625 Position (kb) 1911 1912 1913 1914Strain fitness (log2 ratio) -1 0 1 2at 1911.350 kb on + strandat 1911.358 kb on - strandat 1911.446 kb on + strandat 1912.043 kb on + strandat 1912.122 kb on + strand, within Shewana3_1624at 1912.368 kb on + strand, within Shewana3_1624at 1912.444 kb on - strand, within Shewana3_1624at 1912.677 kb on + strand, within Shewana3_1624at 1912.736 kb on - strand, within Shewana3_1624at 1912.932 kb on + strand, within Shewana3_1624at 1913.541 kb on + strand, within Shewana3_1624at 1913.894 kb on - strandat 1914.012 kb on + strandat 1914.371 kb on - strand, within Shewana3_1625at 1914.473 kb on - strand, within Shewana3_1625

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,911,350 + +0.6
1,911,358 - +1.9
1,911,446 + +0.5
1,912,043 + +0.1
1,912,122 + Shewana3_1624 0.12 +0.5
1,912,368 + Shewana3_1624 0.25 +0.9
1,912,444 - Shewana3_1624 0.29 +0.3
1,912,677 + Shewana3_1624 0.41 +1.3
1,912,736 - Shewana3_1624 0.44 +1.9
1,912,932 + Shewana3_1624 0.55 +0.9
1,913,541 + Shewana3_1624 0.87 +0.8
1,913,894 - +1.0
1,914,012 + -0.8
1,914,371 - Shewana3_1625 0.30 +0.0
1,914,473 - Shewana3_1625 0.40 -0.9

Or see this region's nucleotide sequence