Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1611

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0082 and Shewana3_1611 are separated by 928 nucleotidesShewana3_1611 and Shewana3_1612 are separated by 563 nucleotides Shewana3_R0082: Shewana3_R0082 - tRNA-Leu (RefSeq), at 1,892,953 to 1,893,039 _R0082 Shewana3_1611: Shewana3_1611 - hypothetical protein (RefSeq), at 1,893,968 to 1,894,246 _1611 Shewana3_1612: Shewana3_1612 - hypothetical protein (RefSeq), at 1,894,810 to 1,896,678 _1612 Position (kb) 1893 1894 1895Strain fitness (log2 ratio) -1 0 1 2 3at 1893.016 kb on + strand, within Shewana3_R0082at 1893.282 kb on + strandat 1893.559 kb on + strandat 1893.585 kb on - strandat 1893.606 kb on + strandat 1893.698 kb on + strandat 1893.721 kb on - strandat 1894.053 kb on + strand, within Shewana3_1611at 1894.058 kb on + strand, within Shewana3_1611at 1894.058 kb on + strand, within Shewana3_1611at 1894.063 kb on + strand, within Shewana3_1611at 1894.063 kb on + strand, within Shewana3_1611at 1894.063 kb on + strand, within Shewana3_1611at 1894.063 kb on + strand, within Shewana3_1611at 1894.066 kb on - strand, within Shewana3_1611at 1894.066 kb on - strand, within Shewana3_1611at 1894.071 kb on - strand, within Shewana3_1611at 1894.071 kb on - strandat 1894.454 kb on + strandat 1894.454 kb on + strandat 1894.459 kb on + strandat 1894.459 kb on + strandat 1894.516 kb on - strandat 1894.645 kb on - strandat 1894.807 kb on - strandat 1894.842 kb on - strandat 1894.859 kb on - strandat 1894.916 kb on - strandat 1894.981 kb on + strandat 1894.981 kb on + strandat 1895.016 kb on + strand, within Shewana3_1612at 1895.024 kb on - strand, within Shewana3_1612at 1895.071 kb on - strand, within Shewana3_1612at 1895.135 kb on + strand, within Shewana3_1612at 1895.219 kb on - strand, within Shewana3_1612at 1895.232 kb on + strand, within Shewana3_1612

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,893,016 + Shewana3_R0082 0.72 -0.1
1,893,282 + +0.9
1,893,559 + +1.9
1,893,585 - -0.4
1,893,606 + +0.3
1,893,698 + -0.1
1,893,721 - +1.9
1,894,053 + Shewana3_1611 0.30 +1.9
1,894,058 + Shewana3_1611 0.32 -0.9
1,894,058 + Shewana3_1611 0.32 -1.5
1,894,063 + Shewana3_1611 0.34 -0.1
1,894,063 + Shewana3_1611 0.34 -0.1
1,894,063 + Shewana3_1611 0.34 -1.1
1,894,063 + Shewana3_1611 0.34 -0.1
1,894,066 - Shewana3_1611 0.35 +0.9
1,894,066 - Shewana3_1611 0.35 -0.1
1,894,071 - Shewana3_1611 0.37 +1.9
1,894,071 - +1.9
1,894,454 + +2.9
1,894,454 + -1.1
1,894,459 + +0.3
1,894,459 + -1.4
1,894,516 - +1.9
1,894,645 - -0.9
1,894,807 - -0.1
1,894,842 - +0.3
1,894,859 - -0.1
1,894,916 - +0.9
1,894,981 + +0.1
1,894,981 + +0.9
1,895,016 + Shewana3_1612 0.11 +1.9
1,895,024 - Shewana3_1612 0.11 +0.9
1,895,071 - Shewana3_1612 0.14 +0.9
1,895,135 + Shewana3_1612 0.17 +0.9
1,895,219 - Shewana3_1612 0.22 +0.3
1,895,232 + Shewana3_1612 0.23 +0.9

Or see this region's nucleotide sequence