Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1576 and Shewana3_1577 overlap by 1 nucleotides Shewana3_1577 and Shewana3_1578 are separated by 142 nucleotides Shewana3_1578 and Shewana3_1579 are separated by 236 nucleotides
Shewana3_1576: Shewana3_1576 - cyclic nucleotide-binding protein (RefSeq), at 1,844,556 to 1,846,418
_1576
Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104
_1577
Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672
_1578
Shewana3_1579: Shewana3_1579 - alcohol dehydrogenase (RefSeq), at 1,847,909 to 1,848,904
_1579
Position (kb)
1846
1847
1848 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1845.714 kb on + strand, within Shewana3_1576 at 1845.727 kb on - strand, within Shewana3_1576 at 1845.729 kb on - strand, within Shewana3_1576 at 1845.738 kb on + strand, within Shewana3_1576 at 1845.738 kb on + strand, within Shewana3_1576 at 1845.933 kb on + strand, within Shewana3_1576 at 1845.938 kb on + strand, within Shewana3_1576 at 1846.296 kb on - strand at 1846.437 kb on + strand at 1846.437 kb on + strand at 1846.501 kb on - strand, within Shewana3_1577 at 1846.570 kb on + strand, within Shewana3_1577 at 1846.605 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.677 kb on + strand, within Shewana3_1577 at 1846.685 kb on - strand, within Shewana3_1577 at 1846.865 kb on - strand, within Shewana3_1577 at 1846.938 kb on + strand, within Shewana3_1577 at 1846.944 kb on + strand, within Shewana3_1577 at 1846.946 kb on - strand, within Shewana3_1577 at 1847.067 kb on + strand at 1847.075 kb on - strand at 1847.479 kb on - strand, within Shewana3_1578 at 1847.554 kb on + strand, within Shewana3_1578 at 1847.605 kb on - strand, within Shewana3_1578 at 1847.644 kb on - strand at 1847.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,845,714 + Shewana3_1576 0.62 -2.6 1,845,727 - Shewana3_1576 0.63 -0.1 1,845,729 - Shewana3_1576 0.63 -0.4 1,845,738 + Shewana3_1576 0.63 -1.2 1,845,738 + Shewana3_1576 0.63 -0.9 1,845,933 + Shewana3_1576 0.74 +1.9 1,845,938 + Shewana3_1576 0.74 -0.2 1,846,296 - +1.9 1,846,437 + -0.5 1,846,437 + -2.2 1,846,501 - Shewana3_1577 0.12 -0.9 1,846,570 + Shewana3_1577 0.22 +0.3 1,846,605 + Shewana3_1577 0.27 -0.1 1,846,677 + Shewana3_1577 0.38 +0.9 1,846,677 + Shewana3_1577 0.38 +2.9 1,846,685 - Shewana3_1577 0.39 -0.1 1,846,865 - Shewana3_1577 0.65 -1.1 1,846,938 + Shewana3_1577 0.76 -2.3 1,846,944 + Shewana3_1577 0.77 +0.9 1,846,946 - Shewana3_1577 0.77 -0.1 1,847,067 + +1.9 1,847,075 - +1.9 1,847,479 - Shewana3_1578 0.54 +0.2 1,847,554 + Shewana3_1578 0.72 +1.9 1,847,605 - Shewana3_1578 0.84 -0.7 1,847,644 - +0.5 1,847,962 + -2.6
Or see this region's nucleotide sequence