Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1536 and Shewana3_1537 are separated by 144 nucleotides Shewana3_1537 and Shewana3_1538 are separated by 52 nucleotides Shewana3_1538 and Shewana3_1539 are separated by 3 nucleotides
Shewana3_1536: Shewana3_1536 - hypothetical protein (RefSeq), at 1,791,925 to 1,792,992
_1536
Shewana3_1537: Shewana3_1537 - GDSL family lipase (RefSeq), at 1,793,137 to 1,793,736
_1537
Shewana3_1538: Shewana3_1538 - ABC transporter related (RefSeq), at 1,793,789 to 1,794,538
_1538
Shewana3_1539: Shewana3_1539 - hypothetical protein (RefSeq), at 1,794,542 to 1,797,043
_1539
Position (kb)
1793
1794
1795 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1793.289 kb on - strand, within Shewana3_1537 at 1793.635 kb on + strand, within Shewana3_1537 at 1793.698 kb on - strand at 1793.931 kb on + strand, within Shewana3_1538 at 1793.964 kb on - strand, within Shewana3_1538 at 1794.130 kb on - strand, within Shewana3_1538 at 1794.190 kb on - strand, within Shewana3_1538 at 1794.197 kb on + strand, within Shewana3_1538 at 1794.205 kb on - strand, within Shewana3_1538 at 1794.230 kb on + strand, within Shewana3_1538 at 1794.338 kb on - strand, within Shewana3_1538 at 1794.405 kb on + strand, within Shewana3_1538 at 1794.478 kb on + strand at 1794.629 kb on - strand at 1794.653 kb on - strand at 1794.923 kb on + strand, within Shewana3_1539 at 1794.935 kb on + strand, within Shewana3_1539 at 1794.988 kb on + strand, within Shewana3_1539 at 1795.320 kb on + strand, within Shewana3_1539 at 1795.320 kb on + strand, within Shewana3_1539 at 1795.320 kb on + strand, within Shewana3_1539 at 1795.360 kb on + strand, within Shewana3_1539 at 1795.405 kb on - strand, within Shewana3_1539
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,793,289 - Shewana3_1537 0.25 -0.5 1,793,635 + Shewana3_1537 0.83 -0.1 1,793,698 - -0.9 1,793,931 + Shewana3_1538 0.19 -0.4 1,793,964 - Shewana3_1538 0.23 -0.5 1,794,130 - Shewana3_1538 0.45 -1.8 1,794,190 - Shewana3_1538 0.53 -1.1 1,794,197 + Shewana3_1538 0.54 -0.9 1,794,205 - Shewana3_1538 0.55 -1.1 1,794,230 + Shewana3_1538 0.59 -0.4 1,794,338 - Shewana3_1538 0.73 +1.9 1,794,405 + Shewana3_1538 0.82 -0.9 1,794,478 + -0.9 1,794,629 - -0.5 1,794,653 - -0.9 1,794,923 + Shewana3_1539 0.15 +0.8 1,794,935 + Shewana3_1539 0.16 +0.2 1,794,988 + Shewana3_1539 0.18 +0.5 1,795,320 + Shewana3_1539 0.31 +0.3 1,795,320 + Shewana3_1539 0.31 -0.2 1,795,320 + Shewana3_1539 0.31 +0.4 1,795,360 + Shewana3_1539 0.33 -0.2 1,795,405 - Shewana3_1539 0.34 -0.9
Or see this region's nucleotide sequence