Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1448 and Shewana3_1449 are separated by 121 nucleotides Shewana3_1449 and Shewana3_1450 are separated by 100 nucleotides
Shewana3_1448: Shewana3_1448 - hypothetical protein (RefSeq), at 1,679,600 to 1,680,352
_1448
Shewana3_1449: Shewana3_1449 - hypothetical protein (RefSeq), at 1,680,474 to 1,680,860
_1449
Shewana3_1450: Shewana3_1450 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 1,680,961 to 1,682,247
_1450
Position (kb)
1680
1681 Strain fitness (log2 ratio)
-1
0
1 at 1679.987 kb on - strand, within Shewana3_1448 at 1679.992 kb on - strand, within Shewana3_1448 at 1679.993 kb on - strand, within Shewana3_1448 at 1680.083 kb on + strand, within Shewana3_1448 at 1680.101 kb on - strand, within Shewana3_1448 at 1680.112 kb on + strand, within Shewana3_1448 at 1680.190 kb on - strand, within Shewana3_1448 at 1680.211 kb on - strand, within Shewana3_1448 at 1680.232 kb on + strand, within Shewana3_1448 at 1680.252 kb on - strand, within Shewana3_1448 at 1680.394 kb on - strand at 1680.462 kb on + strand at 1680.488 kb on + strand at 1680.496 kb on - strand at 1680.690 kb on + strand, within Shewana3_1449 at 1680.863 kb on + strand at 1680.957 kb on - strand at 1680.958 kb on - strand at 1680.959 kb on + strand at 1680.984 kb on - strand at 1680.989 kb on - strand at 1680.999 kb on - strand at 1681.258 kb on + strand, within Shewana3_1450 at 1681.271 kb on - strand, within Shewana3_1450 at 1681.301 kb on - strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.397 kb on + strand, within Shewana3_1450 at 1681.405 kb on - strand, within Shewana3_1450 at 1681.405 kb on - strand, within Shewana3_1450 at 1681.405 kb on - strand, within Shewana3_1450 at 1681.494 kb on - strand, within Shewana3_1450
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,679,987 - Shewana3_1448 0.51 +1.7 1,679,992 - Shewana3_1448 0.52 -0.9 1,679,993 - Shewana3_1448 0.52 -0.1 1,680,083 + Shewana3_1448 0.64 +0.1 1,680,101 - Shewana3_1448 0.67 -0.7 1,680,112 + Shewana3_1448 0.68 +1.2 1,680,190 - Shewana3_1448 0.78 -1.2 1,680,211 - Shewana3_1448 0.81 -0.0 1,680,232 + Shewana3_1448 0.84 -0.6 1,680,252 - Shewana3_1448 0.87 +0.7 1,680,394 - -1.0 1,680,462 + +1.7 1,680,488 + -1.6 1,680,496 - -1.5 1,680,690 + Shewana3_1449 0.56 -1.0 1,680,863 + -1.3 1,680,957 - +0.8 1,680,958 - +0.2 1,680,959 + -1.6 1,680,984 - +0.8 1,680,989 - +1.2 1,680,999 - +1.4 1,681,258 + Shewana3_1450 0.23 +0.1 1,681,271 - Shewana3_1450 0.24 +1.5 1,681,301 - Shewana3_1450 0.26 +0.7 1,681,397 + Shewana3_1450 0.34 -1.3 1,681,397 + Shewana3_1450 0.34 +1.1 1,681,397 + Shewana3_1450 0.34 -0.3 1,681,397 + Shewana3_1450 0.34 +1.7 1,681,397 + Shewana3_1450 0.34 +1.7 1,681,397 + Shewana3_1450 0.34 -1.4 1,681,405 - Shewana3_1450 0.34 +1.1 1,681,405 - Shewana3_1450 0.34 +1.4 1,681,405 - Shewana3_1450 0.34 +1.2 1,681,494 - Shewana3_1450 0.41 +1.4
Or see this region's nucleotide sequence