Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1362

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1360 and Shewana3_1361 are separated by 13 nucleotidesShewana3_1361 and Shewana3_1362 are separated by 15 nucleotidesShewana3_1362 and Shewana3_1363 are separated by 18 nucleotides Shewana3_1360: Shewana3_1360 - response regulator receiver protein (RefSeq), at 1,572,985 to 1,573,368 _1360 Shewana3_1361: Shewana3_1361 - chemotaxis phosphatase, CheZ (RefSeq), at 1,573,382 to 1,574,119 _1361 Shewana3_1362: Shewana3_1362 - CheA signal transduction histidine kinases (RefSeq), at 1,574,135 to 1,576,423 _1362 Shewana3_1363: Shewana3_1363 - chemotaxis-specific methylesterase (RefSeq), at 1,576,442 to 1,577,566 _1363 Position (kb) 1574 1575 1576 1577Strain fitness (log2 ratio) -1 0 1 2 3at 1573.403 kb on - strandat 1574.551 kb on - strandat 1574.572 kb on + strand, within Shewana3_1362at 1574.578 kb on + strand, within Shewana3_1362at 1575.311 kb on + strand, within Shewana3_1362at 1575.612 kb on + strand, within Shewana3_1362at 1575.657 kb on - strand, within Shewana3_1362at 1576.050 kb on + strand, within Shewana3_1362at 1576.098 kb on - strand, within Shewana3_1362at 1576.129 kb on + strand, within Shewana3_1362at 1576.137 kb on - strand, within Shewana3_1362at 1576.137 kb on - strand, within Shewana3_1362at 1576.360 kb on - strandat 1576.372 kb on + strandat 1576.382 kb on + strandat 1576.754 kb on + strand, within Shewana3_1363at 1576.831 kb on - strand, within Shewana3_1363at 1576.912 kb on - strand, within Shewana3_1363at 1577.296 kb on + strand, within Shewana3_1363at 1577.377 kb on + strand, within Shewana3_1363

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,573,403 - +0.7
1,574,551 - +1.7
1,574,572 + Shewana3_1362 0.19 +1.4
1,574,578 + Shewana3_1362 0.19 +1.8
1,575,311 + Shewana3_1362 0.51 +2.8
1,575,612 + Shewana3_1362 0.65 +2.1
1,575,657 - Shewana3_1362 0.66 -0.3
1,576,050 + Shewana3_1362 0.84 +2.0
1,576,098 - Shewana3_1362 0.86 +1.7
1,576,129 + Shewana3_1362 0.87 +1.3
1,576,137 - Shewana3_1362 0.87 +1.7
1,576,137 - Shewana3_1362 0.87 +0.7
1,576,360 - +0.7
1,576,372 + +2.1
1,576,382 + +3.6
1,576,754 + Shewana3_1363 0.28 +0.3
1,576,831 - Shewana3_1363 0.35 +0.1
1,576,912 - Shewana3_1363 0.42 +1.7
1,577,296 + Shewana3_1363 0.76 +0.7
1,577,377 + Shewana3_1363 0.83 +1.0

Or see this region's nucleotide sequence