Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1323

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1320 and flgB are separated by 144 nucleotidesflgB and flgC are separated by 2 nucleotidesflgC and flgD are separated by 24 nucleotidesflgD and flgE are separated by 69 nucleotides Shewana3_1320: Shewana3_1320 - MCP methyltransferase, CheR-type (RefSeq), at 1,533,497 to 1,534,336 _1320 Shewana3_1321: flgB - flagellar basal body rod protein FlgB (RefSeq), at 1,534,481 to 1,534,885 flgB Shewana3_1322: flgC - flagellar basal body rod protein FlgC (RefSeq), at 1,534,888 to 1,535,304 flgC Shewana3_1323: flgD - flagellar basal body rod modification protein (RefSeq), at 1,535,329 to 1,536,108 flgD Shewana3_1324: flgE - flagellar hook protein FlgE (RefSeq), at 1,536,178 to 1,537,539 flgE Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -1 0 1 2at 1534.509 kb on - strandat 1534.630 kb on - strand, within flgBat 1534.825 kb on - strand, within flgBat 1535.096 kb on + strand, within flgCat 1535.231 kb on + strand, within flgCat 1535.267 kb on + strandat 1535.482 kb on + strand, within flgDat 1535.490 kb on + strand, within flgDat 1535.490 kb on + strand, within flgDat 1535.490 kb on - strand, within flgDat 1535.498 kb on - strand, within flgDat 1535.769 kb on - strand, within flgDat 1535.854 kb on - strand, within flgDat 1535.861 kb on + strand, within flgDat 1536.068 kb on + strandat 1536.076 kb on - strandat 1536.223 kb on + strandat 1536.255 kb on + strandat 1536.271 kb on + strandat 1536.737 kb on + strand, within flgEat 1536.744 kb on - strand, within flgEat 1536.902 kb on + strand, within flgEat 1536.983 kb on - strand, within flgEat 1536.985 kb on + strand, within flgE

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,534,509 - -1.4
1,534,630 - flgB Shewana3_1321 0.37 +1.6
1,534,825 - flgB Shewana3_1321 0.85 -1.2
1,535,096 + flgC Shewana3_1322 0.50 +1.4
1,535,231 + flgC Shewana3_1322 0.82 +1.6
1,535,267 + +0.8
1,535,482 + flgD Shewana3_1323 0.20 +1.5
1,535,490 + flgD Shewana3_1323 0.21 +0.8
1,535,490 + flgD Shewana3_1323 0.21 +2.4
1,535,490 - flgD Shewana3_1323 0.21 -1.2
1,535,498 - flgD Shewana3_1323 0.22 +0.6
1,535,769 - flgD Shewana3_1323 0.56 +0.6
1,535,854 - flgD Shewana3_1323 0.67 -0.7
1,535,861 + flgD Shewana3_1323 0.68 +2.3
1,536,068 + +1.7
1,536,076 - -1.0
1,536,223 + +1.2
1,536,255 + +1.0
1,536,271 + +1.9
1,536,737 + flgE Shewana3_1324 0.41 +1.4
1,536,744 - flgE Shewana3_1324 0.42 +1.6
1,536,902 + flgE Shewana3_1324 0.53 +0.3
1,536,983 - flgE Shewana3_1324 0.59 +1.6
1,536,985 + flgE Shewana3_1324 0.59 +1.8

Or see this region's nucleotide sequence