Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1313

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0053 and Shewana3_1313 are separated by 55 nucleotidesShewana3_1313 and Shewana3_1314 are separated by 239 nucleotidesShewana3_1314 and Shewana3_1315 overlap by 4 nucleotides Shewana3_R0053: Shewana3_R0053 - tRNA-Arg (RefSeq), at 1,528,014 to 1,528,089 _R0053 Shewana3_1313: Shewana3_1313 - hypothetical protein (RefSeq), at 1,528,145 to 1,529,311 _1313 Shewana3_1314: Shewana3_1314 - hypothetical protein (RefSeq), at 1,529,551 to 1,530,183 _1314 Shewana3_1315: Shewana3_1315 - hypothetical protein (RefSeq), at 1,530,180 to 1,530,629 _1315 Position (kb) 1528 1529 1530Strain fitness (log2 ratio) -2 -1 0 1at 1527.373 kb on + strandat 1527.381 kb on - strandat 1527.381 kb on - strandat 1527.381 kb on - strandat 1527.381 kb on - strandat 1527.383 kb on + strandat 1527.393 kb on + strandat 1527.415 kb on - strandat 1527.758 kb on - strandat 1527.804 kb on + strandat 1527.812 kb on - strandat 1528.372 kb on - strand, within Shewana3_1313at 1528.388 kb on + strand, within Shewana3_1313at 1528.511 kb on - strand, within Shewana3_1313at 1528.511 kb on - strand, within Shewana3_1313at 1528.521 kb on - strand, within Shewana3_1313at 1528.620 kb on + strand, within Shewana3_1313at 1528.892 kb on + strand, within Shewana3_1313at 1529.000 kb on - strand, within Shewana3_1313at 1529.321 kb on - strandat 1529.369 kb on - strandat 1529.420 kb on + strandat 1529.438 kb on + strandat 1529.473 kb on + strandat 1529.473 kb on + strandat 1529.481 kb on - strandat 1529.554 kb on - strandat 1529.561 kb on - strandat 1529.592 kb on + strandat 1529.715 kb on + strand, within Shewana3_1314at 1529.751 kb on + strand, within Shewana3_1314at 1529.959 kb on - strand, within Shewana3_1314at 1530.092 kb on + strand, within Shewana3_1314at 1530.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,527,373 + -1.2
1,527,381 - -0.6
1,527,381 - -0.9
1,527,381 - -0.8
1,527,381 - -0.6
1,527,383 + +0.0
1,527,393 + -0.4
1,527,415 - -0.7
1,527,758 - -1.7
1,527,804 + -2.0
1,527,812 - -0.4
1,528,372 - Shewana3_1313 0.19 -1.5
1,528,388 + Shewana3_1313 0.21 -2.1
1,528,511 - Shewana3_1313 0.31 +0.0
1,528,511 - Shewana3_1313 0.31 -0.5
1,528,521 - Shewana3_1313 0.32 -2.0
1,528,620 + Shewana3_1313 0.41 -1.3
1,528,892 + Shewana3_1313 0.64 -0.6
1,529,000 - Shewana3_1313 0.73 -1.0
1,529,321 - -1.7
1,529,369 - +0.0
1,529,420 + +0.0
1,529,438 + -0.4
1,529,473 + +0.4
1,529,473 + -0.9
1,529,481 - -1.5
1,529,554 - -1.0
1,529,561 - +0.3
1,529,592 + -0.2
1,529,715 + Shewana3_1314 0.26 +0.7
1,529,751 + Shewana3_1314 0.32 -0.4
1,529,959 - Shewana3_1314 0.64 +0.6
1,530,092 + Shewana3_1314 0.85 +0.1
1,530,202 - -0.2

Or see this region's nucleotide sequence