Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_R0053 and Shewana3_1313 are separated by 55 nucleotides Shewana3_1313 and Shewana3_1314 are separated by 239 nucleotides Shewana3_1314 and Shewana3_1315 overlap by 4 nucleotides
Shewana3_R0053: Shewana3_R0053 - tRNA-Arg (RefSeq), at 1,528,014 to 1,528,089
_R0053
Shewana3_1313: Shewana3_1313 - hypothetical protein (RefSeq), at 1,528,145 to 1,529,311
_1313
Shewana3_1314: Shewana3_1314 - hypothetical protein (RefSeq), at 1,529,551 to 1,530,183
_1314
Shewana3_1315: Shewana3_1315 - hypothetical protein (RefSeq), at 1,530,180 to 1,530,629
_1315
Position (kb)
1528
1529
1530 Strain fitness (log2 ratio)
-2
-1
0
1 at 1527.373 kb on + strand at 1527.381 kb on - strand at 1527.381 kb on - strand at 1527.381 kb on - strand at 1527.381 kb on - strand at 1527.383 kb on + strand at 1527.393 kb on + strand at 1527.415 kb on - strand at 1527.758 kb on - strand at 1527.804 kb on + strand at 1527.812 kb on - strand at 1528.372 kb on - strand, within Shewana3_1313 at 1528.388 kb on + strand, within Shewana3_1313 at 1528.511 kb on - strand, within Shewana3_1313 at 1528.511 kb on - strand, within Shewana3_1313 at 1528.521 kb on - strand, within Shewana3_1313 at 1528.620 kb on + strand, within Shewana3_1313 at 1528.892 kb on + strand, within Shewana3_1313 at 1529.000 kb on - strand, within Shewana3_1313 at 1529.321 kb on - strand at 1529.369 kb on - strand at 1529.420 kb on + strand at 1529.438 kb on + strand at 1529.473 kb on + strand at 1529.473 kb on + strand at 1529.481 kb on - strand at 1529.554 kb on - strand at 1529.561 kb on - strand at 1529.592 kb on + strand at 1529.715 kb on + strand, within Shewana3_1314 at 1529.751 kb on + strand, within Shewana3_1314 at 1529.959 kb on - strand, within Shewana3_1314 at 1530.092 kb on + strand, within Shewana3_1314 at 1530.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,527,373 + -1.2 1,527,381 - -0.6 1,527,381 - -0.9 1,527,381 - -0.8 1,527,381 - -0.6 1,527,383 + +0.0 1,527,393 + -0.4 1,527,415 - -0.7 1,527,758 - -1.7 1,527,804 + -2.0 1,527,812 - -0.4 1,528,372 - Shewana3_1313 0.19 -1.5 1,528,388 + Shewana3_1313 0.21 -2.1 1,528,511 - Shewana3_1313 0.31 +0.0 1,528,511 - Shewana3_1313 0.31 -0.5 1,528,521 - Shewana3_1313 0.32 -2.0 1,528,620 + Shewana3_1313 0.41 -1.3 1,528,892 + Shewana3_1313 0.64 -0.6 1,529,000 - Shewana3_1313 0.73 -1.0 1,529,321 - -1.7 1,529,369 - +0.0 1,529,420 + +0.0 1,529,438 + -0.4 1,529,473 + +0.4 1,529,473 + -0.9 1,529,481 - -1.5 1,529,554 - -1.0 1,529,561 - +0.3 1,529,592 + -0.2 1,529,715 + Shewana3_1314 0.26 +0.7 1,529,751 + Shewana3_1314 0.32 -0.4 1,529,959 - Shewana3_1314 0.64 +0.6 1,530,092 + Shewana3_1314 0.85 +0.1 1,530,202 - -0.2
Or see this region's nucleotide sequence