Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1262

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1260 and Shewana3_1261 are separated by 5 nucleotidesShewana3_1261 and Shewana3_1262 are separated by 83 nucleotidesShewana3_1262 and Shewana3_1263 are separated by 26 nucleotides Shewana3_1260: Shewana3_1260 - no description, at 1,476,070 to 1,476,324 _1260 Shewana3_1261: Shewana3_1261 - hypothetical protein (RefSeq), at 1,476,330 to 1,477,127 _1261 Shewana3_1262: Shewana3_1262 - hypothetical protein (RefSeq), at 1,477,211 to 1,477,495 _1262 Shewana3_1263: Shewana3_1263 - putative replication initiator and transcription repressor protein (RefSeq), at 1,477,522 to 1,478,379 _1263 Position (kb) 1477 1478Strain fitness (log2 ratio) -1 0 1at 1476.287 kb on + strand, within Shewana3_1260at 1476.545 kb on - strand, within Shewana3_1261at 1476.755 kb on + strand, within Shewana3_1261at 1476.787 kb on + strand, within Shewana3_1261at 1476.859 kb on - strand, within Shewana3_1261at 1476.915 kb on + strand, within Shewana3_1261at 1477.154 kb on + strandat 1477.302 kb on + strand, within Shewana3_1262at 1477.310 kb on - strand, within Shewana3_1262at 1477.384 kb on + strand, within Shewana3_1262at 1477.500 kb on - strandat 1477.587 kb on - strandat 1477.613 kb on - strand, within Shewana3_1263at 1477.622 kb on + strand, within Shewana3_1263at 1477.673 kb on + strand, within Shewana3_1263at 1478.044 kb on - strand, within Shewana3_1263at 1478.132 kb on + strand, within Shewana3_1263at 1478.132 kb on + strand, within Shewana3_1263at 1478.150 kb on + strand, within Shewana3_1263at 1478.204 kb on - strand, within Shewana3_1263at 1478.294 kb on - strandat 1478.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,476,287 + Shewana3_1260 0.85 +0.4
1,476,545 - Shewana3_1261 0.27 +0.7
1,476,755 + Shewana3_1261 0.53 -0.2
1,476,787 + Shewana3_1261 0.57 -0.2
1,476,859 - Shewana3_1261 0.66 -0.1
1,476,915 + Shewana3_1261 0.73 +0.1
1,477,154 + +0.4
1,477,302 + Shewana3_1262 0.32 +0.9
1,477,310 - Shewana3_1262 0.35 +0.2
1,477,384 + Shewana3_1262 0.61 +1.1
1,477,500 - -0.2
1,477,587 - +0.2
1,477,613 - Shewana3_1263 0.11 +0.1
1,477,622 + Shewana3_1263 0.12 +0.9
1,477,673 + Shewana3_1263 0.18 +1.0
1,478,044 - Shewana3_1263 0.61 +0.3
1,478,132 + Shewana3_1263 0.71 -0.2
1,478,132 + Shewana3_1263 0.71 -0.2
1,478,150 + Shewana3_1263 0.73 -0.0
1,478,204 - Shewana3_1263 0.79 +0.4
1,478,294 - -0.6
1,478,305 - +0.3

Or see this region's nucleotide sequence