Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1241

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1241 and Shewana3_1242 are separated by 15 nucleotides Shewana3_1241: Shewana3_1241 - cytochrome bd ubiquinol oxidase, subunit I (RefSeq), at 1,455,552 to 1,457,108 _1241 Shewana3_1242: Shewana3_1242 - cytochrome d ubiquinol oxidase, subunit II (RefSeq), at 1,457,124 to 1,458,263 _1242 Position (kb) 1455 1456 1457 1458Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1454.674 kb on - strandat 1454.685 kb on + strandat 1454.685 kb on + strandat 1454.767 kb on + strandat 1454.826 kb on - strandat 1454.831 kb on + strandat 1454.839 kb on - strandat 1454.839 kb on - strandat 1455.620 kb on + strandat 1455.641 kb on - strandat 1455.711 kb on + strand, within Shewana3_1241at 1456.009 kb on - strand, within Shewana3_1241at 1456.100 kb on + strand, within Shewana3_1241at 1456.210 kb on + strand, within Shewana3_1241at 1456.473 kb on + strand, within Shewana3_1241at 1456.557 kb on + strand, within Shewana3_1241at 1456.557 kb on + strand, within Shewana3_1241at 1456.639 kb on - strand, within Shewana3_1241at 1456.657 kb on + strand, within Shewana3_1241at 1456.997 kb on + strandat 1457.005 kb on + strandat 1457.058 kb on - strandat 1457.278 kb on - strand, within Shewana3_1242at 1457.310 kb on + strand, within Shewana3_1242at 1457.542 kb on + strand, within Shewana3_1242at 1457.640 kb on + strand, within Shewana3_1242at 1457.667 kb on - strand, within Shewana3_1242at 1457.701 kb on + strand, within Shewana3_1242at 1457.709 kb on - strand, within Shewana3_1242at 1457.738 kb on + strand, within Shewana3_1242at 1457.740 kb on + strand, within Shewana3_1242at 1457.843 kb on + strand, within Shewana3_1242at 1457.851 kb on - strand, within Shewana3_1242at 1457.916 kb on + strand, within Shewana3_1242at 1458.050 kb on + strand, within Shewana3_1242

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,454,674 - +0.3
1,454,685 + +1.6
1,454,685 + +0.6
1,454,767 + -0.4
1,454,826 - +1.1
1,454,831 + +0.6
1,454,839 - -1.0
1,454,839 - -0.8
1,455,620 + -3.0
1,455,641 - -3.1
1,455,711 + Shewana3_1241 0.10 -3.8
1,456,009 - Shewana3_1241 0.29 -1.0
1,456,100 + Shewana3_1241 0.35 -5.7
1,456,210 + Shewana3_1241 0.42 -4.8
1,456,473 + Shewana3_1241 0.59 -4.7
1,456,557 + Shewana3_1241 0.65 -4.7
1,456,557 + Shewana3_1241 0.65 -3.6
1,456,639 - Shewana3_1241 0.70 -0.4
1,456,657 + Shewana3_1241 0.71 -3.3
1,456,997 + -4.1
1,457,005 + -5.0
1,457,058 - -0.8
1,457,278 - Shewana3_1242 0.14 -1.8
1,457,310 + Shewana3_1242 0.16 -6.1
1,457,542 + Shewana3_1242 0.37 -2.4
1,457,640 + Shewana3_1242 0.45 -5.3
1,457,667 - Shewana3_1242 0.48 -3.9
1,457,701 + Shewana3_1242 0.51 -3.8
1,457,709 - Shewana3_1242 0.51 -3.6
1,457,738 + Shewana3_1242 0.54 -3.4
1,457,740 + Shewana3_1242 0.54 -5.6
1,457,843 + Shewana3_1242 0.63 -1.8
1,457,851 - Shewana3_1242 0.64 -0.4
1,457,916 + Shewana3_1242 0.69 -1.2
1,458,050 + Shewana3_1242 0.81 -3.4

Or see this region's nucleotide sequence