Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1239

Experiment: Chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1238 and Shewana3_1239 are separated by 439 nucleotidesShewana3_1239 and Shewana3_1240 are separated by 279 nucleotides Shewana3_1238: Shewana3_1238 - tRNA-adenosine deaminase (RefSeq), at 1,447,605 to 1,448,273 _1238 Shewana3_1239: Shewana3_1239 - lytic transglycosylase, catalytic (RefSeq), at 1,448,713 to 1,450,149 _1239 Shewana3_1240: Shewana3_1240 - phosphoribosylformylglycinamidine synthase (RefSeq), at 1,450,429 to 1,454,310 _1240 Position (kb) 1448 1449 1450 1451Strain fitness (log2 ratio) -3 -2 -1 0 1at 1448.229 kb on + strandat 1448.230 kb on + strandat 1448.267 kb on + strandat 1448.267 kb on + strandat 1448.275 kb on - strandat 1448.573 kb on + strandat 1448.573 kb on + strandat 1448.625 kb on - strandat 1448.837 kb on - strandat 1448.872 kb on - strand, within Shewana3_1239at 1449.012 kb on - strand, within Shewana3_1239at 1449.207 kb on + strand, within Shewana3_1239at 1449.207 kb on + strand, within Shewana3_1239at 1449.634 kb on + strand, within Shewana3_1239at 1449.642 kb on - strand, within Shewana3_1239at 1449.642 kb on - strand, within Shewana3_1239at 1449.642 kb on - strand, within Shewana3_1239at 1449.912 kb on + strand, within Shewana3_1239at 1449.920 kb on - strand, within Shewana3_1239at 1449.989 kb on + strand, within Shewana3_1239at 1450.332 kb on + strandat 1450.387 kb on + strandat 1450.572 kb on - strandat 1450.604 kb on + strandat 1450.733 kb on - strandat 1450.816 kb on + strandat 1450.944 kb on + strand, within Shewana3_1240at 1451.058 kb on + strand, within Shewana3_1240at 1451.066 kb on - strand, within Shewana3_1240at 1451.066 kb on - strand, within Shewana3_1240at 1451.124 kb on + strand, within Shewana3_1240

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.16 mM
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1,448,229 + -2.8
1,448,230 + -1.4
1,448,267 + -0.5
1,448,267 + -1.9
1,448,275 - -0.4
1,448,573 + -1.6
1,448,573 + -2.6
1,448,625 - +1.6
1,448,837 - +0.6
1,448,872 - Shewana3_1239 0.11 -1.6
1,449,012 - Shewana3_1239 0.21 -0.4
1,449,207 + Shewana3_1239 0.34 -0.8
1,449,207 + Shewana3_1239 0.34 -1.0
1,449,634 + Shewana3_1239 0.64 -2.0
1,449,642 - Shewana3_1239 0.65 +0.4
1,449,642 - Shewana3_1239 0.65 -3.3
1,449,642 - Shewana3_1239 0.65 -1.2
1,449,912 + Shewana3_1239 0.83 -0.8
1,449,920 - Shewana3_1239 0.84 -1.7
1,449,989 + Shewana3_1239 0.89 -1.2
1,450,332 + -0.2
1,450,387 + -2.3
1,450,572 - -0.0
1,450,604 + +0.1
1,450,733 - -1.6
1,450,816 + +0.6
1,450,944 + Shewana3_1240 0.13 -0.6
1,451,058 + Shewana3_1240 0.16 -0.1
1,451,066 - Shewana3_1240 0.16 +1.6
1,451,066 - Shewana3_1240 0.16 +0.6
1,451,124 + Shewana3_1240 0.18 -2.4

Or see this region's nucleotide sequence