Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1216 and Shewana3_1217 are separated by 211 nucleotides Shewana3_1217 and Shewana3_1218 are separated by 127 nucleotides Shewana3_1218 and Shewana3_1219 are separated by 167 nucleotides Shewana3_1219 and Shewana3_1220 are separated by 63 nucleotides
Shewana3_1216: Shewana3_1216 - acetyltransferase (RefSeq), at 1,421,348 to 1,421,806
_1216
Shewana3_1217: Shewana3_1217 - hypothetical protein (RefSeq), at 1,422,018 to 1,422,227
_1217
Shewana3_1218: Shewana3_1218 - NrfJ-related protein (RefSeq), at 1,422,355 to 1,422,657
_1218
Shewana3_1219: Shewana3_1219 - acetyltransferase (RefSeq), at 1,422,825 to 1,423,346
_1219
Shewana3_1220: Shewana3_1220 - acetyltransferase (RefSeq), at 1,423,410 to 1,423,940
_1220
Position (kb)
1422
1423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1421.399 kb on + strand, within Shewana3_1216 at 1421.487 kb on - strand, within Shewana3_1216 at 1421.624 kb on + strand, within Shewana3_1216 at 1421.656 kb on + strand, within Shewana3_1216 at 1421.664 kb on + strand, within Shewana3_1216 at 1421.825 kb on + strand at 1421.825 kb on + strand at 1421.837 kb on + strand at 1421.837 kb on + strand at 1421.845 kb on - strand at 1422.104 kb on + strand, within Shewana3_1217 at 1422.188 kb on - strand, within Shewana3_1217 at 1422.201 kb on - strand, within Shewana3_1217 at 1422.226 kb on - strand at 1422.472 kb on + strand, within Shewana3_1218 at 1422.887 kb on - strand, within Shewana3_1219 at 1422.956 kb on + strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1422.964 kb on - strand, within Shewana3_1219 at 1423.111 kb on + strand, within Shewana3_1219 at 1423.158 kb on - strand, within Shewana3_1219 at 1423.270 kb on - strand, within Shewana3_1219 at 1423.471 kb on + strand, within Shewana3_1220 at 1423.473 kb on + strand, within Shewana3_1220 at 1423.630 kb on + strand, within Shewana3_1220 at 1423.645 kb on - strand, within Shewana3_1220
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,421,399 + Shewana3_1216 0.11 +0.1 1,421,487 - Shewana3_1216 0.30 -1.7 1,421,624 + Shewana3_1216 0.60 +0.0 1,421,656 + Shewana3_1216 0.67 -0.0 1,421,664 + Shewana3_1216 0.69 +0.0 1,421,825 + -0.5 1,421,825 + -0.3 1,421,837 + -1.6 1,421,837 + -0.6 1,421,845 - +1.3 1,422,104 + Shewana3_1217 0.41 +0.6 1,422,188 - Shewana3_1217 0.81 -1.6 1,422,201 - Shewana3_1217 0.87 -0.9 1,422,226 - -0.5 1,422,472 + Shewana3_1218 0.39 +0.8 1,422,887 - Shewana3_1219 0.12 +1.2 1,422,956 + Shewana3_1219 0.25 -1.1 1,422,964 - Shewana3_1219 0.27 -0.3 1,422,964 - Shewana3_1219 0.27 +0.8 1,423,111 + Shewana3_1219 0.55 -1.0 1,423,158 - Shewana3_1219 0.64 -1.2 1,423,270 - Shewana3_1219 0.85 +1.9 1,423,471 + Shewana3_1220 0.11 +0.1 1,423,473 + Shewana3_1220 0.12 +0.4 1,423,630 + Shewana3_1220 0.41 +0.2 1,423,645 - Shewana3_1220 0.44 -2.2
Or see this region's nucleotide sequence