Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1150 and Shewana3_1151 are separated by 232 nucleotides Shewana3_1151 and Shewana3_1152 are separated by 138 nucleotides Shewana3_1152 and Shewana3_1153 are separated by 44 nucleotides
Shewana3_1150: Shewana3_1150 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 1,356,690 to 1,358,258
_1150
Shewana3_1151: Shewana3_1151 - sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq), at 1,358,491 to 1,358,847
_1151
Shewana3_1152: Shewana3_1152 - two component LuxR family transcriptional regulator (RefSeq), at 1,358,986 to 1,359,663
_1152
Shewana3_1153: Shewana3_1153 - putative signal transduction histidine kinase (RefSeq), at 1,359,708 to 1,360,868
_1153
Position (kb)
1358
1359 Strain fitness (log2 ratio)
-2
-1
0
1 at 1357.626 kb on - strand, within Shewana3_1150 at 1357.717 kb on - strand, within Shewana3_1150 at 1357.737 kb on + strand, within Shewana3_1150 at 1357.944 kb on - strand, within Shewana3_1150 at 1358.143 kb on + strand at 1358.151 kb on - strand at 1358.254 kb on - strand at 1358.386 kb on - strand at 1358.481 kb on + strand at 1358.763 kb on + strand, within Shewana3_1151 at 1358.763 kb on + strand, within Shewana3_1151 at 1358.771 kb on - strand, within Shewana3_1151 at 1358.771 kb on - strand, within Shewana3_1151 at 1358.798 kb on + strand, within Shewana3_1151 at 1359.001 kb on + strand at 1359.018 kb on - strand at 1359.190 kb on + strand, within Shewana3_1152 at 1359.253 kb on + strand, within Shewana3_1152 at 1359.253 kb on + strand, within Shewana3_1152 at 1359.266 kb on + strand, within Shewana3_1152 at 1359.468 kb on + strand, within Shewana3_1152 at 1359.493 kb on + strand, within Shewana3_1152 at 1359.630 kb on + strand at 1359.750 kb on + strand at 1359.758 kb on - strand at 1359.758 kb on - strand at 1359.758 kb on - strand at 1359.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,357,626 - Shewana3_1150 0.60 -0.7 1,357,717 - Shewana3_1150 0.65 -0.5 1,357,737 + Shewana3_1150 0.67 -0.2 1,357,944 - Shewana3_1150 0.80 -0.8 1,358,143 + -0.3 1,358,151 - -0.4 1,358,254 - -2.4 1,358,386 - +1.6 1,358,481 + -0.8 1,358,763 + Shewana3_1151 0.76 +0.8 1,358,763 + Shewana3_1151 0.76 +0.8 1,358,771 - Shewana3_1151 0.78 +0.6 1,358,771 - Shewana3_1151 0.78 -0.7 1,358,798 + Shewana3_1151 0.86 +0.7 1,359,001 + -2.5 1,359,018 - +0.3 1,359,190 + Shewana3_1152 0.30 +1.6 1,359,253 + Shewana3_1152 0.39 -0.4 1,359,253 + Shewana3_1152 0.39 -1.6 1,359,266 + Shewana3_1152 0.41 -0.5 1,359,468 + Shewana3_1152 0.71 -0.3 1,359,493 + Shewana3_1152 0.75 +0.0 1,359,630 + -0.7 1,359,750 + +0.5 1,359,758 - +0.5 1,359,758 - +0.0 1,359,758 - -1.4 1,359,776 - +0.4
Or see this region's nucleotide sequence