Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0918 and Shewana3_0919 are separated by 535 nucleotides Shewana3_0919 and Shewana3_0920 are separated by 79 nucleotides Shewana3_0920 and Shewana3_0921 overlap by 1 nucleotides
Shewana3_0918: Shewana3_0918 - Na+/H+ antiporter NhaC (RefSeq), at 1,073,023 to 1,074,360
_0918
Shewana3_0919: Shewana3_0919 - hypothetical protein (RefSeq), at 1,074,896 to 1,075,804
_0919
Shewana3_0920: Shewana3_0920 - FMN-binding domain-containing protein (RefSeq), at 1,075,884 to 1,076,435
_0920
Shewana3_0921: Shewana3_0921 - ApbE family protein, putative (RefSeq), at 1,076,435 to 1,077,283
_0921
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-1
0
1 at 1074.018 kb on - strand, within Shewana3_0918 at 1074.186 kb on - strand, within Shewana3_0918 at 1074.243 kb on - strand at 1074.298 kb on + strand at 1074.340 kb on + strand at 1074.348 kb on - strand at 1074.350 kb on + strand at 1074.577 kb on - strand at 1074.624 kb on + strand at 1074.997 kb on + strand, within Shewana3_0919 at 1075.006 kb on - strand, within Shewana3_0919 at 1075.037 kb on - strand, within Shewana3_0919 at 1075.294 kb on + strand, within Shewana3_0919 at 1075.294 kb on + strand, within Shewana3_0919 at 1075.302 kb on - strand, within Shewana3_0919 at 1075.323 kb on + strand, within Shewana3_0919 at 1075.340 kb on + strand, within Shewana3_0919 at 1075.340 kb on + strand, within Shewana3_0919 at 1075.348 kb on - strand, within Shewana3_0919 at 1075.535 kb on + strand, within Shewana3_0919 at 1075.543 kb on - strand, within Shewana3_0919 at 1075.613 kb on + strand, within Shewana3_0919 at 1075.621 kb on - strand, within Shewana3_0919 at 1075.699 kb on + strand, within Shewana3_0919 at 1075.710 kb on + strand, within Shewana3_0919 at 1075.831 kb on + strand at 1076.019 kb on + strand, within Shewana3_0920 at 1076.025 kb on + strand, within Shewana3_0920 at 1076.033 kb on - strand, within Shewana3_0920 at 1076.033 kb on - strand, within Shewana3_0920 at 1076.171 kb on + strand, within Shewana3_0920 at 1076.179 kb on - strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.218 kb on + strand, within Shewana3_0920 at 1076.226 kb on - strand, within Shewana3_0920 at 1076.226 kb on - strand, within Shewana3_0920 at 1076.226 kb on - strand, within Shewana3_0920 at 1076.251 kb on + strand, within Shewana3_0920 at 1076.261 kb on - strand, within Shewana3_0920 at 1076.423 kb on + strand at 1076.447 kb on + strand at 1076.600 kb on - strand, within Shewana3_0921 at 1076.695 kb on + strand, within Shewana3_0921 at 1076.703 kb on + strand, within Shewana3_0921 at 1076.717 kb on + strand, within Shewana3_0921 at 1076.717 kb on + strand, within Shewana3_0921 at 1076.725 kb on - strand, within Shewana3_0921
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,074,018 - Shewana3_0918 0.74 -0.3 1,074,186 - Shewana3_0918 0.87 -0.1 1,074,243 - +0.8 1,074,298 + -1.1 1,074,340 + -1.4 1,074,348 - -1.3 1,074,350 + -0.2 1,074,577 - +0.6 1,074,624 + +0.3 1,074,997 + Shewana3_0919 0.11 +0.7 1,075,006 - Shewana3_0919 0.12 -1.1 1,075,037 - Shewana3_0919 0.16 -0.3 1,075,294 + Shewana3_0919 0.44 +0.4 1,075,294 + Shewana3_0919 0.44 -0.4 1,075,302 - Shewana3_0919 0.45 +0.4 1,075,323 + Shewana3_0919 0.47 -0.1 1,075,340 + Shewana3_0919 0.49 +0.4 1,075,340 + Shewana3_0919 0.49 +0.6 1,075,348 - Shewana3_0919 0.50 +1.2 1,075,535 + Shewana3_0919 0.70 +0.6 1,075,543 - Shewana3_0919 0.71 -1.3 1,075,613 + Shewana3_0919 0.79 +1.2 1,075,621 - Shewana3_0919 0.80 +0.1 1,075,699 + Shewana3_0919 0.88 +0.3 1,075,710 + Shewana3_0919 0.90 +0.4 1,075,831 + +0.6 1,076,019 + Shewana3_0920 0.24 +0.0 1,076,025 + Shewana3_0920 0.26 -0.5 1,076,033 - Shewana3_0920 0.27 -0.4 1,076,033 - Shewana3_0920 0.27 +0.4 1,076,171 + Shewana3_0920 0.52 +0.4 1,076,179 - Shewana3_0920 0.53 +0.6 1,076,218 + Shewana3_0920 0.61 +0.6 1,076,218 + Shewana3_0920 0.61 -0.7 1,076,218 + Shewana3_0920 0.61 +0.8 1,076,218 + Shewana3_0920 0.61 +0.2 1,076,218 + Shewana3_0920 0.61 +0.0 1,076,218 + Shewana3_0920 0.61 +0.5 1,076,218 + Shewana3_0920 0.61 +0.2 1,076,226 - Shewana3_0920 0.62 -1.4 1,076,226 - Shewana3_0920 0.62 -0.7 1,076,226 - Shewana3_0920 0.62 -0.2 1,076,251 + Shewana3_0920 0.66 +0.3 1,076,261 - Shewana3_0920 0.68 +0.8 1,076,423 + +0.4 1,076,447 + +0.7 1,076,600 - Shewana3_0921 0.19 +0.4 1,076,695 + Shewana3_0921 0.31 +0.5 1,076,703 + Shewana3_0921 0.32 -0.0 1,076,717 + Shewana3_0921 0.33 +0.1 1,076,717 + Shewana3_0921 0.33 -0.5 1,076,725 - Shewana3_0921 0.34 +1.3
Or see this region's nucleotide sequence