Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0880 and Shewana3_0881 overlap by 8 nucleotides Shewana3_0881 and Shewana3_0882 are separated by 5 nucleotides Shewana3_0882 and Shewana3_0883 are separated by 374 nucleotides
Shewana3_0880: Shewana3_0880 - ABC transporter related (RefSeq), at 1,026,759 to 1,027,484
_0880
Shewana3_0881: Shewana3_0881 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,027,477 to 1,028,157
_0881
Shewana3_0882: Shewana3_0882 - extracellular solute-binding protein (RefSeq), at 1,028,163 to 1,028,897
_0882
Shewana3_0883: Shewana3_0883 - hypothetical protein (RefSeq), at 1,029,272 to 1,030,096
_0883
Position (kb) 1028
1029 Strain fitness (log2 ratio) -2
-1
0
1 at 1027.431 kb on + strand at 1027.439 kb on - strand at 1027.552 kb on - strand, within Shewana3_0881 at 1027.552 kb on - strand, within Shewana3_0881 at 1027.559 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.567 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.581 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.848 kb on - strand, within Shewana3_0881 at 1027.953 kb on - strand, within Shewana3_0881 at 1028.005 kb on - strand, within Shewana3_0881 at 1028.019 kb on + strand, within Shewana3_0881 at 1028.020 kb on + strand, within Shewana3_0881 at 1028.070 kb on + strand, within Shewana3_0881 at 1028.146 kb on - strand at 1028.155 kb on - strand at 1028.495 kb on - strand, within Shewana3_0882 at 1028.512 kb on - strand, within Shewana3_0882 at 1028.554 kb on - strand, within Shewana3_0882 at 1028.744 kb on - strand, within Shewana3_0882 at 1028.864 kb on + strand at 1028.934 kb on - strand at 1029.352 kb on + strand at 1029.413 kb on - strand, within Shewana3_0883 at 1029.619 kb on + strand, within Shewana3_0883 at 1029.621 kb on - strand, within Shewana3_0883 at 1029.705 kb on + strand, within Shewana3_0883 at 1029.755 kb on + strand, within Shewana3_0883 at 1029.768 kb on + strand, within Shewana3_0883 at 1029.803 kb on + strand, within Shewana3_0883 at 1029.810 kb on + strand, within Shewana3_0883
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 1,027,431 + -0.0 1,027,439 - +0.3 1,027,552 - Shewana3_0881 0.11 +0.1 1,027,552 - Shewana3_0881 0.11 +0.4 1,027,559 + Shewana3_0881 0.12 -0.6 1,027,561 + Shewana3_0881 0.12 +0.6 1,027,561 + Shewana3_0881 0.12 +0.4 1,027,561 + Shewana3_0881 0.12 -2.6 1,027,561 + Shewana3_0881 0.12 +0.1 1,027,561 + Shewana3_0881 0.12 -1.0 1,027,567 - Shewana3_0881 0.13 -0.0 1,027,569 - Shewana3_0881 0.14 -0.1 1,027,569 - Shewana3_0881 0.14 -0.0 1,027,569 - Shewana3_0881 0.14 -0.2 1,027,569 - Shewana3_0881 0.14 +0.7 1,027,569 - Shewana3_0881 0.14 -0.3 1,027,581 + Shewana3_0881 0.15 -0.8 1,027,618 + Shewana3_0881 0.21 +1.6 1,027,618 + Shewana3_0881 0.21 -0.2 1,027,618 + Shewana3_0881 0.21 -0.9 1,027,848 - Shewana3_0881 0.54 +0.4 1,027,953 - Shewana3_0881 0.70 +1.0 1,028,005 - Shewana3_0881 0.78 +0.8 1,028,019 + Shewana3_0881 0.80 +0.4 1,028,020 + Shewana3_0881 0.80 +0.1 1,028,070 + Shewana3_0881 0.87 -0.3 1,028,146 - +0.5 1,028,155 - +0.3 1,028,495 - Shewana3_0882 0.45 -1.2 1,028,512 - Shewana3_0882 0.47 -1.3 1,028,554 - Shewana3_0882 0.53 -0.7 1,028,744 - Shewana3_0882 0.79 -0.7 1,028,864 + -0.2 1,028,934 - -0.1 1,029,352 + -0.3 1,029,413 - Shewana3_0883 0.17 -0.2 1,029,619 + Shewana3_0883 0.42 -0.6 1,029,621 - Shewana3_0883 0.42 +0.6 1,029,705 + Shewana3_0883 0.52 +0.0 1,029,755 + Shewana3_0883 0.59 +1.0 1,029,768 + Shewana3_0883 0.60 +0.2 1,029,803 + Shewana3_0883 0.64 -0.6 1,029,810 + Shewana3_0883 0.65 +0.3
Or see this region's nucleotide sequence