Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0849 and Shewana3_0850 overlap by 4 nucleotides Shewana3_0850 and Shewana3_0851 are separated by 153 nucleotides Shewana3_0851 and Shewana3_0852 are separated by 86 nucleotides Shewana3_0852 and pntB are separated by 154 nucleotides
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Shewana3_0850: Shewana3_0850 - hypothetical protein (RefSeq), at 987,834 to 988,661
_0850
Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294
_0851
Shewana3_0852: Shewana3_0852 - hypothetical protein (RefSeq), at 989,381 to 989,770
_0852
Shewana3_0853: pntB - pyridine nucleotide transhydrogenase (RefSeq), at 989,925 to 991,409
pntB
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1 at 987.859 kb on + strand at 988.012 kb on + strand, within Shewana3_0850 at 988.019 kb on + strand, within Shewana3_0850 at 988.027 kb on - strand, within Shewana3_0850 at 988.768 kb on + strand at 988.786 kb on - strand at 988.832 kb on + strand at 988.905 kb on + strand, within Shewana3_0851 at 989.106 kb on + strand, within Shewana3_0851 at 989.159 kb on + strand, within Shewana3_0851 at 989.167 kb on - strand, within Shewana3_0851 at 989.557 kb on + strand, within Shewana3_0852 at 989.576 kb on + strand, within Shewana3_0852 at 989.720 kb on - strand, within Shewana3_0852 at 989.767 kb on + strand at 989.856 kb on + strand at 989.864 kb on - strand at 989.864 kb on - strand at 989.923 kb on - strand at 990.014 kb on - strand at 990.105 kb on + strand, within pntB at 990.240 kb on + strand, within pntB
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 987,859 + +0.8 988,012 + Shewana3_0850 0.21 +0.6 988,019 + Shewana3_0850 0.22 -0.6 988,027 - Shewana3_0850 0.23 -0.3 988,768 + -1.7 988,786 - -2.2 988,832 + -0.2 988,905 + Shewana3_0851 0.19 +0.8 989,106 + Shewana3_0851 0.61 +0.6 989,159 + Shewana3_0851 0.72 +1.1 989,167 - Shewana3_0851 0.73 +1.6 989,557 + Shewana3_0852 0.45 -0.8 989,576 + Shewana3_0852 0.50 +0.4 989,720 - Shewana3_0852 0.87 -1.7 989,767 + +0.7 989,856 + -0.0 989,864 - -0.4 989,864 - +0.3 989,923 - -0.8 990,014 - +0.7 990,105 + pntB Shewana3_0853 0.12 +1.2 990,240 + pntB Shewana3_0853 0.21 +0.1
Or see this region's nucleotide sequence