Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0800 and Shewana3_0801 are separated by 142 nucleotides Shewana3_0801 and Shewana3_0802 are separated by 25 nucleotides Shewana3_0802 and Shewana3_0803 are separated by 6 nucleotides
Shewana3_0800: Shewana3_0800 - peptidase U32 (RefSeq), at 922,790 to 924,706
_0800
Shewana3_0801: Shewana3_0801 - hypothetical protein (RefSeq), at 924,849 to 925,223
_0801
Shewana3_0802: Shewana3_0802 - abortive infection protein (RefSeq), at 925,249 to 926,001
_0802
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1 at 923.990 kb on + strand, within Shewana3_0800 at 923.998 kb on - strand, within Shewana3_0800 at 924.137 kb on + strand, within Shewana3_0800 at 924.265 kb on + strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.527 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.943 kb on + strand, within Shewana3_0801 at 925.394 kb on + strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.515 kb on - strand, within Shewana3_0802 at 925.555 kb on + strand, within Shewana3_0802 at 925.563 kb on - strand, within Shewana3_0802 at 925.638 kb on - strand, within Shewana3_0802 at 925.689 kb on - strand, within Shewana3_0802 at 925.714 kb on - strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.850 kb on + strand, within Shewana3_0802 at 925.861 kb on + strand, within Shewana3_0802 at 925.906 kb on + strand, within Shewana3_0802 at 925.939 kb on + strand at 925.939 kb on + strand at 925.983 kb on - strand at 926.032 kb on - strand at 926.064 kb on + strand at 926.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 923,990 + Shewana3_0800 0.63 +0.6 923,998 - Shewana3_0800 0.63 -1.4 924,137 + Shewana3_0800 0.70 +0.7 924,265 + Shewana3_0800 0.77 +0.6 924,273 - Shewana3_0800 0.77 -0.4 924,273 - Shewana3_0800 0.77 +1.6 924,273 - Shewana3_0800 0.77 -1.0 924,527 + +0.4 924,591 + +0.2 924,591 + +0.3 924,591 + +0.6 924,943 + Shewana3_0801 0.25 +1.3 925,394 + Shewana3_0802 0.19 +0.4 925,402 - Shewana3_0802 0.20 -1.0 925,402 - Shewana3_0802 0.20 +0.4 925,402 - Shewana3_0802 0.20 -1.3 925,402 - Shewana3_0802 0.20 -1.0 925,404 - Shewana3_0802 0.21 -0.8 925,404 - Shewana3_0802 0.21 -0.4 925,404 - Shewana3_0802 0.21 -0.1 925,515 - Shewana3_0802 0.35 -0.0 925,555 + Shewana3_0802 0.41 -2.3 925,563 - Shewana3_0802 0.42 -0.8 925,638 - Shewana3_0802 0.52 -0.7 925,689 - Shewana3_0802 0.58 -2.1 925,714 - Shewana3_0802 0.62 -1.2 925,850 + Shewana3_0802 0.80 -0.9 925,850 + Shewana3_0802 0.80 -2.0 925,861 + Shewana3_0802 0.81 -1.7 925,906 + Shewana3_0802 0.87 -0.4 925,939 + +0.4 925,939 + -0.2 925,983 - +0.1 926,032 - -2.6 926,064 + -0.8 926,201 + +0.0
Or see this region's nucleotide sequence