Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0794 and Shewana3_0795 overlap by 4 nucleotides Shewana3_0795 and Shewana3_0796 are separated by 143 nucleotides Shewana3_0796 and Shewana3_0797 are separated by 62 nucleotides
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268
_0795
Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915
_0796
Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159
_0797
Position (kb) 915
916
917 Strain fitness (log2 ratio) -2
-1
0
1 at 914.561 kb on - strand at 914.711 kb on + strand, within Shewana3_0794 at 914.803 kb on - strand, within Shewana3_0794 at 914.812 kb on + strand, within Shewana3_0794 at 914.813 kb on - strand, within Shewana3_0794 at 915.344 kb on + strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.352 kb on - strand, within Shewana3_0794 at 915.727 kb on - strand, within Shewana3_0795 at 915.853 kb on - strand, within Shewana3_0795 at 915.910 kb on + strand, within Shewana3_0795 at 915.951 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.099 kb on + strand, within Shewana3_0795 at 916.133 kb on + strand, within Shewana3_0795 at 916.189 kb on + strand, within Shewana3_0795 at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.247 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.409 kb on + strand at 916.414 kb on + strand at 916.414 kb on + strand at 916.524 kb on - strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.633 kb on + strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand at 916.641 kb on - strand, within Shewana3_0796 at 916.853 kb on + strand, within Shewana3_0796 at 916.885 kb on - strand at 917.022 kb on - strand at 917.028 kb on + strand at 917.058 kb on + strand at 917.064 kb on + strand at 917.066 kb on - strand at 917.095 kb on - strand at 917.102 kb on + strand at 917.199 kb on - strand at 917.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 914,561 - -0.6 914,711 + Shewana3_0794 0.16 -0.3 914,803 - Shewana3_0794 0.26 +0.3 914,812 + Shewana3_0794 0.27 -0.7 914,813 - Shewana3_0794 0.27 -0.7 915,344 + Shewana3_0794 0.83 -0.4 915,352 - Shewana3_0794 0.84 +0.6 915,352 - Shewana3_0794 0.84 -0.0 915,727 - Shewana3_0795 0.30 +1.6 915,853 - Shewana3_0795 0.46 +0.2 915,910 + Shewana3_0795 0.53 -1.4 915,951 - Shewana3_0795 0.59 -1.1 915,966 - Shewana3_0795 0.61 -0.7 915,966 - Shewana3_0795 0.61 -2.2 916,043 - Shewana3_0795 0.71 +0.8 916,043 - Shewana3_0795 0.71 -2.6 916,099 + Shewana3_0795 0.78 +0.0 916,133 + Shewana3_0795 0.82 +0.0 916,189 + Shewana3_0795 0.90 +0.2 916,222 - -1.2 916,222 - -0.4 916,222 - -0.0 916,222 - -0.4 916,222 - +1.6 916,247 + -1.0 916,249 + +0.4 916,249 + +0.1 916,249 + -0.2 916,249 + -0.6 916,249 + -0.1 916,257 - -0.1 916,257 - -1.7 916,257 - -1.2 916,257 - -1.2 916,409 + -1.0 916,414 + -0.5 916,414 + -0.9 916,524 - Shewana3_0796 0.22 +1.6 916,564 + Shewana3_0796 0.30 +0.3 916,564 + Shewana3_0796 0.30 +0.3 916,564 + Shewana3_0796 0.30 +0.8 916,572 - Shewana3_0796 0.32 -1.7 916,572 - Shewana3_0796 0.32 -1.2 916,572 - Shewana3_0796 0.32 -0.4 916,633 + Shewana3_0796 0.44 +0.2 916,641 - Shewana3_0796 0.45 -0.6 916,641 - Shewana3_0796 0.45 -1.0 916,641 - +1.6 916,641 - Shewana3_0796 0.45 +1.0 916,853 + Shewana3_0796 0.88 +0.6 916,885 - +0.6 917,022 - -0.4 917,028 + +0.6 917,058 + -0.4 917,064 + -1.8 917,066 - +0.2 917,095 - +0.2 917,102 + -1.9 917,199 - +0.1 917,234 - +0.3
Or see this region's nucleotide sequence