Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0772 and Shewana3_0773 overlap by 1 nucleotides Shewana3_0773 and Shewana3_0774 are separated by 144 nucleotides Shewana3_0774 and Shewana3_0775 are separated by 57 nucleotides
Shewana3_0772: Shewana3_0772 - invasion gene expression up-regulator, SirB (RefSeq), at 894,248 to 894,643
_0772
Shewana3_0773: Shewana3_0773 - hypothetical protein (RefSeq), at 894,643 to 895,431
_0773
Shewana3_0774: Shewana3_0774 - hypothetical protein (RefSeq), at 895,576 to 896,823
_0774
Shewana3_0775: Shewana3_0775 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 896,881 to 897,729
_0775
Position (kb) 895
896
897 Strain fitness (log2 ratio) -1
0
1 at 894.899 kb on + strand, within Shewana3_0773 at 894.934 kb on + strand, within Shewana3_0773 at 894.990 kb on + strand, within Shewana3_0773 at 895.101 kb on + strand, within Shewana3_0773 at 895.594 kb on + strand at 895.640 kb on + strand at 895.829 kb on + strand, within Shewana3_0774 at 896.219 kb on + strand, within Shewana3_0774 at 896.221 kb on + strand, within Shewana3_0774 at 896.252 kb on + strand, within Shewana3_0774 at 896.722 kb on + strand at 896.752 kb on + strand at 896.774 kb on + strand at 896.833 kb on + strand at 896.870 kb on + strand at 897.701 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 894,899 + Shewana3_0773 0.32 -0.1 894,934 + Shewana3_0773 0.37 -0.2 894,990 + Shewana3_0773 0.44 -0.3 895,101 + Shewana3_0773 0.58 -0.6 895,594 + +0.5 895,640 + -0.4 895,829 + Shewana3_0774 0.20 +0.7 896,219 + Shewana3_0774 0.52 +0.3 896,221 + Shewana3_0774 0.52 +0.6 896,252 + Shewana3_0774 0.54 +1.5 896,722 + +0.4 896,752 + +0.5 896,774 + +0.4 896,833 + +0.1 896,870 + +1.1 897,701 + +0.6
Or see this region's nucleotide sequence