Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0632 and Shewana3_0633 are separated by 291 nucleotides Shewana3_0633 and Shewana3_0634 are separated by 62 nucleotides
Shewana3_0632: Shewana3_0632 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 742,284 to 743,582
_0632
Shewana3_0633: Shewana3_0633 - molydopterin dinucleotide-binding region (RefSeq), at 743,874 to 746,981
_0633
Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138
_0634
Position (kb) 743
744
745
746
747 Strain fitness (log2 ratio) -1
0
1 at 742.893 kb on - strand, within Shewana3_0632 at 743.143 kb on + strand, within Shewana3_0632 at 743.151 kb on - strand, within Shewana3_0632 at 743.255 kb on + strand, within Shewana3_0632 at 743.257 kb on - strand, within Shewana3_0632 at 743.430 kb on - strand, within Shewana3_0632 at 743.484 kb on - strand at 743.636 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.678 kb on + strand at 743.984 kb on + strand at 744.071 kb on + strand at 744.071 kb on + strand at 744.219 kb on + strand, within Shewana3_0633 at 744.260 kb on - strand, within Shewana3_0633 at 744.267 kb on + strand, within Shewana3_0633 at 744.336 kb on + strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.344 kb on - strand, within Shewana3_0633 at 744.567 kb on - strand, within Shewana3_0633 at 744.758 kb on - strand, within Shewana3_0633 at 745.093 kb on + strand, within Shewana3_0633 at 745.101 kb on - strand, within Shewana3_0633 at 745.101 kb on - strand, within Shewana3_0633 at 745.114 kb on + strand, within Shewana3_0633 at 745.213 kb on - strand, within Shewana3_0633 at 745.327 kb on + strand, within Shewana3_0633 at 745.514 kb on + strand, within Shewana3_0633 at 745.514 kb on + strand, within Shewana3_0633 at 745.522 kb on - strand, within Shewana3_0633 at 745.522 kb on - strand, within Shewana3_0633 at 745.664 kb on - strand, within Shewana3_0633 at 745.715 kb on - strand, within Shewana3_0633 at 745.759 kb on + strand, within Shewana3_0633 at 745.965 kb on + strand, within Shewana3_0633 at 745.965 kb on + strand, within Shewana3_0633 at 745.973 kb on - strand, within Shewana3_0633 at 746.131 kb on + strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.139 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.197 kb on - strand, within Shewana3_0633 at 746.282 kb on - strand, within Shewana3_0633 at 746.332 kb on - strand, within Shewana3_0633 at 746.491 kb on - strand, within Shewana3_0633 at 746.717 kb on + strand at 746.801 kb on - strand at 746.898 kb on + strand at 746.904 kb on + strand at 746.945 kb on - strand at 746.998 kb on - strand at 747.125 kb on + strand at 747.330 kb on - strand, within Shewana3_0634 at 747.428 kb on + strand, within Shewana3_0634 at 747.448 kb on + strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.456 kb on - strand, within Shewana3_0634 at 747.494 kb on + strand, within Shewana3_0634 at 747.815 kb on + strand, within Shewana3_0634 at 747.922 kb on + strand, within Shewana3_0634
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 742,893 - Shewana3_0632 0.47 -0.4 743,143 + Shewana3_0632 0.66 -1.2 743,151 - Shewana3_0632 0.67 -0.4 743,255 + Shewana3_0632 0.75 +0.3 743,257 - Shewana3_0632 0.75 +0.5 743,430 - Shewana3_0632 0.88 +0.4 743,484 - +0.5 743,636 + -0.2 743,678 + -0.3 743,678 + +0.2 743,678 + -0.7 743,678 + +0.8 743,984 + +0.0 744,071 + -0.2 744,071 + +0.1 744,219 + Shewana3_0633 0.11 -0.5 744,260 - Shewana3_0633 0.12 +0.5 744,267 + Shewana3_0633 0.13 -0.8 744,336 + Shewana3_0633 0.15 -1.5 744,344 - Shewana3_0633 0.15 +0.6 744,344 - Shewana3_0633 0.15 -0.2 744,344 - Shewana3_0633 0.15 +0.6 744,567 - Shewana3_0633 0.22 -0.0 744,758 - Shewana3_0633 0.28 +0.7 745,093 + Shewana3_0633 0.39 -0.2 745,101 - Shewana3_0633 0.39 -0.4 745,101 - Shewana3_0633 0.39 +0.4 745,114 + Shewana3_0633 0.40 +0.1 745,213 - Shewana3_0633 0.43 +0.5 745,327 + Shewana3_0633 0.47 -0.9 745,514 + Shewana3_0633 0.53 -0.1 745,514 + Shewana3_0633 0.53 -0.5 745,522 - Shewana3_0633 0.53 +0.8 745,522 - Shewana3_0633 0.53 +0.7 745,664 - Shewana3_0633 0.58 +0.3 745,715 - Shewana3_0633 0.59 +0.2 745,759 + Shewana3_0633 0.61 -0.0 745,965 + Shewana3_0633 0.67 +0.3 745,965 + Shewana3_0633 0.67 +0.2 745,973 - Shewana3_0633 0.68 +0.5 746,131 + Shewana3_0633 0.73 -0.6 746,139 - Shewana3_0633 0.73 -0.6 746,139 - Shewana3_0633 0.73 +0.4 746,139 - Shewana3_0633 0.73 +0.4 746,139 - Shewana3_0633 0.73 -0.0 746,197 - Shewana3_0633 0.75 -0.2 746,197 - Shewana3_0633 0.75 +0.0 746,282 - Shewana3_0633 0.77 -0.2 746,332 - Shewana3_0633 0.79 +0.9 746,491 - Shewana3_0633 0.84 -0.6 746,717 + +0.6 746,801 - +0.4 746,898 + +0.3 746,904 + -1.0 746,945 - +0.1 746,998 - -1.6 747,125 + -0.4 747,330 - Shewana3_0634 0.26 -0.3 747,428 + Shewana3_0634 0.35 +0.1 747,448 + Shewana3_0634 0.37 -0.2 747,456 - Shewana3_0634 0.38 +0.1 747,456 - Shewana3_0634 0.38 +0.5 747,494 + Shewana3_0634 0.41 -0.7 747,815 + Shewana3_0634 0.70 -0.6 747,922 + Shewana3_0634 0.80 +0.3
Or see this region's nucleotide sequence