Experiment: Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides Shewana3_0163 and Shewana3_0164 overlap by 23 nucleotides Shewana3_0164 and Shewana3_0165 overlap by 4 nucleotides
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Shewana3_0164: Shewana3_0164 - phytanoyl-CoA dioxygenase (RefSeq), at 186,990 to 189,002
_0164
Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165
_0165
Position (kb) 186
187
188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163 at 186.571 kb on - strand, within Shewana3_0163 at 186.578 kb on + strand, within Shewana3_0163 at 186.654 kb on + strand, within Shewana3_0163 at 186.764 kb on + strand, within Shewana3_0163 at 186.772 kb on - strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.785 kb on - strand, within Shewana3_0163 at 186.847 kb on + strand, within Shewana3_0163 at 187.012 kb on + strand at 187.047 kb on - strand at 187.078 kb on + strand at 187.078 kb on + strand at 187.180 kb on + strand at 187.250 kb on - strand, within Shewana3_0164 at 187.294 kb on - strand, within Shewana3_0164 at 187.428 kb on + strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.490 kb on + strand, within Shewana3_0164 at 187.527 kb on + strand, within Shewana3_0164 at 187.925 kb on - strand, within Shewana3_0164 at 188.148 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.305 kb on - strand, within Shewana3_0164 at 188.310 kb on - strand, within Shewana3_0164 at 188.376 kb on + strand, within Shewana3_0164 at 188.378 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.637 kb on - strand, within Shewana3_0164 at 188.839 kb on + strand at 188.859 kb on - strand at 188.949 kb on + strand at 189.138 kb on + strand, within Shewana3_0165 at 189.241 kb on + strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.347 kb on + strand, within Shewana3_0165 at 189.354 kb on - strand, within Shewana3_0165 at 189.366 kb on - strand, within Shewana3_0165 at 189.459 kb on + strand, within Shewana3_0165 at 189.469 kb on + strand, within Shewana3_0165 at 189.495 kb on + strand, within Shewana3_0165 at 189.517 kb on + strand, within Shewana3_0165 at 189.537 kb on - strand, within Shewana3_0165 at 189.577 kb on - strand, within Shewana3_0165 at 189.589 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.602 kb on - strand, within Shewana3_0165 at 189.678 kb on + strand, within Shewana3_0165 at 189.760 kb on + strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.770 kb on + strand, within Shewana3_0165 at 189.941 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.958 kb on - strand, within Shewana3_0165
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.16 mM remove 186,049 - Shewana3_0162 0.63 +0.1 186,122 - Shewana3_0162 0.74 -0.3 186,171 - Shewana3_0162 0.82 +0.2 186,171 - Shewana3_0162 0.82 +0.1 186,270 - +0.2 186,406 + -1.0 186,552 - Shewana3_0163 0.25 +0.1 186,563 + Shewana3_0163 0.27 -0.3 186,571 - Shewana3_0163 0.28 -0.1 186,578 + Shewana3_0163 0.29 -0.5 186,654 + Shewana3_0163 0.42 +0.1 186,764 + Shewana3_0163 0.60 +0.2 186,772 - Shewana3_0163 0.61 -0.4 186,777 + Shewana3_0163 0.62 +0.0 186,777 + Shewana3_0163 0.62 -0.3 186,785 - Shewana3_0163 0.63 -0.3 186,847 + Shewana3_0163 0.73 +0.3 187,012 + -0.1 187,047 - -1.4 187,078 + -0.1 187,078 + -0.1 187,180 + +0.8 187,250 - Shewana3_0164 0.13 -0.4 187,294 - Shewana3_0164 0.15 -2.5 187,428 + Shewana3_0164 0.22 -0.7 187,436 - Shewana3_0164 0.22 -0.2 187,436 - Shewana3_0164 0.22 -1.0 187,490 + Shewana3_0164 0.25 -0.4 187,527 + Shewana3_0164 0.27 -0.4 187,925 - Shewana3_0164 0.46 +0.0 188,148 + Shewana3_0164 0.58 -0.7 188,276 + Shewana3_0164 0.64 -0.4 188,276 + Shewana3_0164 0.64 -0.0 188,305 - Shewana3_0164 0.65 -0.7 188,310 - Shewana3_0164 0.66 -3.2 188,376 + Shewana3_0164 0.69 +0.2 188,378 - Shewana3_0164 0.69 -1.0 188,385 - Shewana3_0164 0.69 +0.0 188,385 - Shewana3_0164 0.69 -0.9 188,637 - Shewana3_0164 0.82 -0.6 188,839 + -0.2 188,859 - -0.7 188,949 + -0.3 189,138 + Shewana3_0165 0.12 -0.6 189,241 + Shewana3_0165 0.21 -0.9 189,344 - Shewana3_0165 0.30 -0.1 189,344 - Shewana3_0165 0.30 +0.2 189,346 + Shewana3_0165 0.30 -0.6 189,346 + Shewana3_0165 0.30 -0.3 189,347 + Shewana3_0165 0.30 -0.6 189,354 - Shewana3_0165 0.30 -0.3 189,366 - Shewana3_0165 0.31 -0.3 189,459 + Shewana3_0165 0.39 -0.3 189,469 + Shewana3_0165 0.40 +0.2 189,495 + Shewana3_0165 0.43 +0.1 189,517 + Shewana3_0165 0.44 -1.5 189,537 - Shewana3_0165 0.46 +0.2 189,577 - Shewana3_0165 0.50 -0.1 189,589 + Shewana3_0165 0.51 -0.2 189,594 + Shewana3_0165 0.51 -0.2 189,594 + Shewana3_0165 0.51 -0.2 189,602 - Shewana3_0165 0.52 -0.8 189,678 + Shewana3_0165 0.58 -0.8 189,760 + Shewana3_0165 0.65 +0.0 189,768 - Shewana3_0165 0.66 -0.0 189,768 - Shewana3_0165 0.66 -0.3 189,770 + Shewana3_0165 0.66 -0.2 189,941 + Shewana3_0165 0.81 -0.0 189,950 + Shewana3_0165 0.81 +0.7 189,950 + Shewana3_0165 0.81 +0.4 189,958 - Shewana3_0165 0.82 -0.5
Or see this region's nucleotide sequence